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3-2.evaluating_NOVOPlasty_plastomes.sh
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3-2.evaluating_NOVOPlasty_plastomes.sh
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evaluate_assembly_using_mapping.py -1 ERR1917165_1.fastq.gz -2 ERR1917165_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--ERR1917165-plastome--evaluated -f NOVOPlasty-plastome/K23/ERR1917165-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title ERR1917165-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ERR2206741_1.fastq.gz -2 ERR2206741_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--ERR2206741-plastome--evaluated -f NOVOPlasty-plastome/K23/ERR2206741-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR2206741-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR268390_1.fastq.gz -2 ERR268390_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--ERR268390-plastome--evaluated -f NOVOPlasty-plastome/K23/ERR268390-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR268390-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 14 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR964904_1.fastq.gz -2 ERR964904_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--ERR964904-plastome--evaluated -f NOVOPlasty-plastome/K23/ERR964904-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title ERR964904-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR1145775_1.fastq.gz -2 SRR1145775_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR1145775-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR1145775-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR1145775-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR2057084_1.fastq.gz -2 SRR2057084_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR2057084-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR2057084-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR2057084-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 169 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR4428742_1.fastq.gz -2 SRR4428742_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR4428742-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR4428742-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR4428742-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5028199_1.fastq.gz -2 SRR5028199_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5028199-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5028199-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5028199-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 117 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602572_1.fastq.gz -2 SRR5602572_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602572-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602572-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602572-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602573_1.fastq.gz -2 SRR5602573_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602573-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602573-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602573-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602574_1.fastq.gz -2 SRR5602574_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602574-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602574-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602574-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602575_1.fastq.gz -2 SRR5602575_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602575-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602575-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602575-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602576_1.fastq.gz -2 SRR5602576_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602576-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602576-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602576-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602577_1.fastq.gz -2 SRR5602577_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602577-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602577-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602577-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602578_1.fastq.gz -2 SRR5602578_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602578-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602578-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602578-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602579_1.fastq.gz -2 SRR5602579_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602579-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602579-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602579-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602581_1.fastq.gz -2 SRR5602581_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602581-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602581-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602581-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602582_1.fastq.gz -2 SRR5602582_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602582-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602582-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602582-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602583_1.fastq.gz -2 SRR5602583_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602583-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602583-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602583-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602584_1.fastq.gz -2 SRR5602584_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602584-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602584-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602584-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602585_1.fastq.gz -2 SRR5602585_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602585-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602585-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602585-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602586_1.fastq.gz -2 SRR5602586_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602586-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602586-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602586-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602587_1.fastq.gz -2 SRR5602587_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602587-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602587-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602587-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602588_1.fastq.gz -2 SRR5602588_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602588-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602588-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602588-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602589_1.fastq.gz -2 SRR5602589_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602589-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602589-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602589-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602590_1.fastq.gz -2 SRR5602590_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602590-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602590-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602590-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602591_1.fastq.gz -2 SRR5602591_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602591-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602591-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602591-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602592_1.fastq.gz -2 SRR5602592_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602592-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602592-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602592-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602593_1.fastq.gz -2 SRR5602593_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602593-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602593-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602593-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602594_1.fastq.gz -2 SRR5602594_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602594-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602594-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602594-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602595_1.fastq.gz -2 SRR5602595_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602595-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602595-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602595-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602596_1.fastq.gz -2 SRR5602596_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602596-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602596-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602596-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602597_1.fastq.gz -2 SRR5602597_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602597-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602597-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602597-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602598_1.fastq.gz -2 SRR5602598_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602598-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602598-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602598-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602599_1.fastq.gz -2 SRR5602599_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602599-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602599-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602599-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602600_1.fastq.gz -2 SRR5602600_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602600-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602600-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602600-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602601_1.fastq.gz -2 SRR5602601_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602601-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602601-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602601-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602602_1.fastq.gz -2 SRR5602602_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602602-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602602-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602602-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602603_1.fastq.gz -2 SRR5602603_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602603-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602603-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602603-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602604_1.fastq.gz -2 SRR5602604_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602604-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602604-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602604-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602605_1.fastq.gz -2 SRR5602605_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602605-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602605-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602605-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602606_1.fastq.gz -2 SRR5602606_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602606-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602606-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602606-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602607_1.fastq.gz -2 SRR5602607_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602607-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602607-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602607-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602608_1.fastq.gz -2 SRR5602608_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602608-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602608-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602608-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602609_1.fastq.gz -2 SRR5602609_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602609-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602609-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602609-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602610_1.fastq.gz -2 SRR5602610_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR5602610-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR5602610-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602610-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR6478596_1.fastq.gz -2 SRR6478596_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR6478596-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR6478596-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR6478596-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 330 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR6932851_1.fastq.gz -2 SRR6932851_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR6932851-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR6932851-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR6932851-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR2037123_1.fastq.gz -2 SRR2037123_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR2037123-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR2037123-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR2037123-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR7630500_1.fastq.gz -2 SRR7630500_2.fastq.gz -o NOVOPlasty-plastome/K23/NOVOPlasty-K23--SRR7630500-plastome--evaluated -f NOVOPlasty-plastome/K23/SRR7630500-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR7630500-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=23, Genome Range=15000-180000 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR1917165_1.fastq.gz -2 ERR1917165_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--ERR1917165-plastome--evaluated -f NOVOPlasty-plastome/K31/ERR1917165-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title ERR1917165-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ERR2206741_1.fastq.gz -2 ERR2206741_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--ERR2206741-plastome--evaluated -f NOVOPlasty-plastome/K31/ERR2206741-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR2206741-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR268390_1.fastq.gz -2 ERR268390_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--ERR268390-plastome--evaluated -f NOVOPlasty-plastome/K31/ERR268390-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR268390-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 14 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR964904_1.fastq.gz -2 ERR964904_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--ERR964904-plastome--evaluated -f NOVOPlasty-plastome/K31/ERR964904-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR964904-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 82 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR1145775_1.fastq.gz -2 SRR1145775_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR1145775-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR1145775-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR1145775-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR2057084_1.fastq.gz -2 SRR2057084_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR2057084-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR2057084-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR2057084-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 65 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR4428742_1.fastq.gz -2 SRR4428742_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR4428742-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR4428742-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR4428742-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5028199_1.fastq.gz -2 SRR5028199_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5028199-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5028199-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5028199-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 186 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602572_1.fastq.gz -2 SRR5602572_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602572-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602572-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602572-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602573_1.fastq.gz -2 SRR5602573_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602573-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602573-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602573-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602574_1.fastq.gz -2 SRR5602574_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602574-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602574-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602574-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602575_1.fastq.gz -2 SRR5602575_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602575-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602575-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602575-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602576_1.fastq.gz -2 SRR5602576_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602576-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602576-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602576-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602577_1.fastq.gz -2 SRR5602577_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602577-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602577-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602577-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602578_1.fastq.gz -2 SRR5602578_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602578-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602578-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602578-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602579_1.fastq.gz -2 SRR5602579_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602579-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602579-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602579-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602581_1.fastq.gz -2 SRR5602581_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602581-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602581-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602581-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602582_1.fastq.gz -2 SRR5602582_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602582-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602582-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602582-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602583_1.fastq.gz -2 SRR5602583_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602583-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602583-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602583-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602584_1.fastq.gz -2 SRR5602584_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602584-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602584-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602584-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602585_1.fastq.gz -2 SRR5602585_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602585-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602585-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602585-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602586_1.fastq.gz -2 SRR5602586_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602586-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602586-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602586-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602587_1.fastq.gz -2 SRR5602587_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602587-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602587-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602587-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602588_1.fastq.gz -2 SRR5602588_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602588-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602588-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602588-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602589_1.fastq.gz -2 SRR5602589_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602589-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602589-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602589-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602590_1.fastq.gz -2 SRR5602590_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602590-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602590-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602590-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602591_1.fastq.gz -2 SRR5602591_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602591-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602591-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602591-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602592_1.fastq.gz -2 SRR5602592_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602592-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602592-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602592-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602593_1.fastq.gz -2 SRR5602593_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602593-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602593-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602593-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602594_1.fastq.gz -2 SRR5602594_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602594-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602594-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602594-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602595_1.fastq.gz -2 SRR5602595_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602595-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602595-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602595-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602596_1.fastq.gz -2 SRR5602596_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602596-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602596-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602596-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602597_1.fastq.gz -2 SRR5602597_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602597-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602597-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602597-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602598_1.fastq.gz -2 SRR5602598_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602598-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602598-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602598-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602599_1.fastq.gz -2 SRR5602599_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602599-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602599-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602599-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602600_1.fastq.gz -2 SRR5602600_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602600-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602600-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602600-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602601_1.fastq.gz -2 SRR5602601_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602601-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602601-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602601-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602602_1.fastq.gz -2 SRR5602602_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602602-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602602-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602602-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602603_1.fastq.gz -2 SRR5602603_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602603-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602603-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602603-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602604_1.fastq.gz -2 SRR5602604_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602604-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602604-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602604-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602605_1.fastq.gz -2 SRR5602605_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602605-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602605-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602605-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602606_1.fastq.gz -2 SRR5602606_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602606-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602606-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602606-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602607_1.fastq.gz -2 SRR5602607_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602607-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602607-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602607-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602608_1.fastq.gz -2 SRR5602608_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602608-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602608-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602608-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602609_1.fastq.gz -2 SRR5602609_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602609-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602609-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602609-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602610_1.fastq.gz -2 SRR5602610_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR5602610-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR5602610-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602610-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR6478596_1.fastq.gz -2 SRR6478596_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR6478596-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR6478596-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR6478596-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR6932851_1.fastq.gz -2 SRR6932851_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR6932851-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR6932851-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR6932851-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR2037123_1.fastq.gz -2 SRR2037123_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR2037123-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR2037123-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR2037123-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR7630500_1.fastq.gz -2 SRR7630500_2.fastq.gz -o NOVOPlasty-plastome/K31/NOVOPlasty-K31--SRR7630500-plastome--evaluated -f NOVOPlasty-plastome/K31/SRR7630500-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR7630500-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=31, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR1917165_1.fastq.gz -2 ERR1917165_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--ERR1917165-plastome--evaluated -f NOVOPlasty-plastome/K39/ERR1917165-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title ERR1917165-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ERR2206741_1.fastq.gz -2 ERR2206741_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--ERR2206741-plastome--evaluated -f NOVOPlasty-plastome/K39/ERR2206741-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR2206741-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 0 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR268390_1.fastq.gz -2 ERR268390_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--ERR268390-plastome--evaluated -f NOVOPlasty-plastome/K39/ERR268390-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR268390-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 14 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR964904_1.fastq.gz -2 ERR964904_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--ERR964904-plastome--evaluated -f NOVOPlasty-plastome/K39/ERR964904-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR964904-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 145 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR1145775_1.fastq.gz -2 SRR1145775_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR1145775-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR1145775-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR1145775-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR2057084_1.fastq.gz -2 SRR2057084_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR2057084-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR2057084-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR2057084-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 100 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR4428742_1.fastq.gz -2 SRR4428742_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR4428742-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR4428742-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR4428742-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5028199_1.fastq.gz -2 SRR5028199_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5028199-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5028199-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5028199-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 100 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602572_1.fastq.gz -2 SRR5602572_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602572-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602572-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602572-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602573_1.fastq.gz -2 SRR5602573_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602573-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602573-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602573-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602574_1.fastq.gz -2 SRR5602574_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602574-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602574-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602574-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602575_1.fastq.gz -2 SRR5602575_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602575-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602575-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602575-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602576_1.fastq.gz -2 SRR5602576_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602576-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602576-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602576-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602577_1.fastq.gz -2 SRR5602577_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602577-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602577-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602577-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 6 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602578_1.fastq.gz -2 SRR5602578_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602578-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602578-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602578-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602579_1.fastq.gz -2 SRR5602579_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602579-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602579-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602579-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602581_1.fastq.gz -2 SRR5602581_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602581-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602581-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602581-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602582_1.fastq.gz -2 SRR5602582_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602582-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602582-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602582-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602583_1.fastq.gz -2 SRR5602583_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602583-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602583-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602583-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602584_1.fastq.gz -2 SRR5602584_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602584-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602584-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602584-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602585_1.fastq.gz -2 SRR5602585_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602585-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602585-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602585-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602586_1.fastq.gz -2 SRR5602586_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602586-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602586-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602586-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602587_1.fastq.gz -2 SRR5602587_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602587-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602587-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602587-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602588_1.fastq.gz -2 SRR5602588_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602588-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602588-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602588-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602589_1.fastq.gz -2 SRR5602589_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602589-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602589-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602589-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602590_1.fastq.gz -2 SRR5602590_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602590-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602590-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602590-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602591_1.fastq.gz -2 SRR5602591_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602591-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602591-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602591-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602592_1.fastq.gz -2 SRR5602592_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602592-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602592-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602592-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602593_1.fastq.gz -2 SRR5602593_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602593-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602593-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602593-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602594_1.fastq.gz -2 SRR5602594_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602594-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602594-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602594-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602595_1.fastq.gz -2 SRR5602595_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602595-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602595-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602595-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602596_1.fastq.gz -2 SRR5602596_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602596-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602596-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602596-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602597_1.fastq.gz -2 SRR5602597_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602597-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602597-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602597-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602598_1.fastq.gz -2 SRR5602598_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602598-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602598-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602598-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602599_1.fastq.gz -2 SRR5602599_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602599-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602599-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602599-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602600_1.fastq.gz -2 SRR5602600_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602600-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602600-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602600-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602601_1.fastq.gz -2 SRR5602601_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602601-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602601-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602601-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602602_1.fastq.gz -2 SRR5602602_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602602-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602602-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602602-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602603_1.fastq.gz -2 SRR5602603_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602603-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602603-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602603-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602604_1.fastq.gz -2 SRR5602604_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602604-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602604-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602604-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602605_1.fastq.gz -2 SRR5602605_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602605-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602605-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602605-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602606_1.fastq.gz -2 SRR5602606_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602606-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602606-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602606-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602607_1.fastq.gz -2 SRR5602607_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602607-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602607-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602607-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602608_1.fastq.gz -2 SRR5602608_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602608-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602608-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602608-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602609_1.fastq.gz -2 SRR5602609_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602609-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602609-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602609-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602610_1.fastq.gz -2 SRR5602610_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR5602610-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR5602610-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602610-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR6478596_1.fastq.gz -2 SRR6478596_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR6478596-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR6478596-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR6478596-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR6932851_1.fastq.gz -2 SRR6932851_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR6932851-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR6932851-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR6932851-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR2037123_1.fastq.gz -2 SRR2037123_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR2037123-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR2037123-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR2037123-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR7630500_1.fastq.gz -2 SRR7630500_2.fastq.gz -o NOVOPlasty-plastome/K39/NOVOPlasty-K39--SRR7630500-plastome--evaluated -f NOVOPlasty-plastome/K39/SRR7630500-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR7630500-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=39, Genome Range=15000-180000 Result status: 6 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR1917165_1.fastq.gz -2 ERR1917165_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--ERR1917165-plastome--evaluated -f NOVOPlasty-plastome/K47/ERR1917165-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title ERR1917165-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ERR2206741_1.fastq.gz -2 ERR2206741_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--ERR2206741-plastome--evaluated -f NOVOPlasty-plastome/K47/ERR2206741-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR2206741-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 0 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR268390_1.fastq.gz -2 ERR268390_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--ERR268390-plastome--evaluated -f NOVOPlasty-plastome/K47/ERR268390-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR268390-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 14 contig(s)"
evaluate_assembly_using_mapping.py -1 ERR964904_1.fastq.gz -2 ERR964904_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--ERR964904-plastome--evaluated -f NOVOPlasty-plastome/K47/ERR964904-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title ERR964904-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 166 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR1145775_1.fastq.gz -2 SRR1145775_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR1145775-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR1145775-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR1145775-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR2037123_1.fastq.gz -2 SRR2037123_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR2037123-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR2037123-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR2037123-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR2057084_1.fastq.gz -2 SRR2057084_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR2057084-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR2057084-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR2057084-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 180 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR4428742_1.fastq.gz -2 SRR4428742_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR4428742-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR4428742-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR4428742-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5028199_1.fastq.gz -2 SRR5028199_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5028199-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5028199-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5028199-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602572_1.fastq.gz -2 SRR5602572_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602572-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602572-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602572-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602573_1.fastq.gz -2 SRR5602573_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602573-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602573-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602573-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602574_1.fastq.gz -2 SRR5602574_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602574-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602574-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602574-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602575_1.fastq.gz -2 SRR5602575_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602575-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602575-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602575-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602576_1.fastq.gz -2 SRR5602576_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602576-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602576-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602576-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602577_1.fastq.gz -2 SRR5602577_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602577-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602577-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602577-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 6 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602578_1.fastq.gz -2 SRR5602578_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602578-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602578-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602578-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 6 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602579_1.fastq.gz -2 SRR5602579_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602579-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602579-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602579-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602581_1.fastq.gz -2 SRR5602581_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602581-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602581-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602581-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602582_1.fastq.gz -2 SRR5602582_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602582-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602582-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602582-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602583_1.fastq.gz -2 SRR5602583_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602583-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602583-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602583-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602584_1.fastq.gz -2 SRR5602584_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602584-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602584-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602584-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602585_1.fastq.gz -2 SRR5602585_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602585-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602585-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602585-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602586_1.fastq.gz -2 SRR5602586_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602586-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602586-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602586-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602587_1.fastq.gz -2 SRR5602587_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602587-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602587-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602587-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602588_1.fastq.gz -2 SRR5602588_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602588-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602588-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602588-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602589_1.fastq.gz -2 SRR5602589_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602589-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602589-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602589-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602590_1.fastq.gz -2 SRR5602590_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602590-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602590-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602590-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602591_1.fastq.gz -2 SRR5602591_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602591-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602591-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602591-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602592_1.fastq.gz -2 SRR5602592_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602592-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602592-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602592-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602593_1.fastq.gz -2 SRR5602593_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602593-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602593-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602593-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602594_1.fastq.gz -2 SRR5602594_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602594-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602594-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602594-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602595_1.fastq.gz -2 SRR5602595_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602595-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602595-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602595-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602596_1.fastq.gz -2 SRR5602596_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602596-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602596-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602596-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602597_1.fastq.gz -2 SRR5602597_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602597-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602597-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602597-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602598_1.fastq.gz -2 SRR5602598_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602598-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602598-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602598-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602599_1.fastq.gz -2 SRR5602599_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602599-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602599-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602599-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602600_1.fastq.gz -2 SRR5602600_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602600-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602600-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602600-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602601_1.fastq.gz -2 SRR5602601_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602601-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602601-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602601-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602602_1.fastq.gz -2 SRR5602602_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602602-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602602-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602602-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602603_1.fastq.gz -2 SRR5602603_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602603-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602603-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602603-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602604_1.fastq.gz -2 SRR5602604_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602604-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602604-plastome/Circularized_assembly_1_novoplasty.plastome.fasta -t 16 --continue --draw -c yes --plot-title SRR5602604-NOVOPlasty --plot-subtitle "Used result file: Circularized_assembly_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 SRR5602605_1.fastq.gz -2 SRR5602605_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602605-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602605-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602605-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602606_1.fastq.gz -2 SRR5602606_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602606-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602606-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602606-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602607_1.fastq.gz -2 SRR5602607_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602607-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602607-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602607-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602608_1.fastq.gz -2 SRR5602608_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602608-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602608-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602608-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602609_1.fastq.gz -2 SRR5602609_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602609-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602609-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602609-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR5602610_1.fastq.gz -2 SRR5602610_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR5602610-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR5602610-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR5602610-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR6478596_1.fastq.gz -2 SRR6478596_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR6478596-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR6478596-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR6478596-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR6932851_1.fastq.gz -2 SRR6932851_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR6932851-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR6932851-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR6932851-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 SRR7630500_1.fastq.gz -2 SRR7630500_2.fastq.gz -o NOVOPlasty-plastome/K47/NOVOPlasty-K47--SRR7630500-plastome--evaluated -f NOVOPlasty-plastome/K47/SRR7630500-plastome/Contigs_1_novoplasty.plastome.fasta -t 16 --continue --draw -c no --plot-title SRR7630500-NOVOPlasty --plot-subtitle "Used result file: Contigs_1_novoplasty.plastome.fasta Options: K-mer=47, Genome Range=15000-180000 Result status: 6 contig(s)"