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8-1.assembling_56_animal_mitogenomes_using_NOVOPlasty.sh
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8-1.assembling_56_animal_mitogenomes_using_NOVOPlasty.sh
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# get RUN_PATH
RUN_PATH="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
echo $RUN_PATH
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/DRR014695-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c DRR014695.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/DRR095708-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c DRR095708.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/ERR1856354-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c ERR1856354.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/ERR1952738-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c ERR1952738.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/ERR466754-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c ERR466754.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR039541-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR039541.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1041081-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1041081.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1055280-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1055280.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1200276-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1200276.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1284940-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1284940.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1298377-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1298377.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1300141-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1300141.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR136494-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR136494.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1566160-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1566160.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1581065-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1581065.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1657027-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1657027.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1743021-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1743021.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1822107-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1822107.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1946581-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1946581.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR1950515-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR1950515.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR2132981-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR2132981.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR2179962-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR2179962.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR2318706-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR2318706.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR2717571-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR2717571.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR2730309-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR2730309.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR2737540-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR2737540.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR3041429-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR3041429.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR305235-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR305235.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR3098386-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR3098386.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR329682-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR329682.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR3879971-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR3879971.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR3953043-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR3953043.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR4095109-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR4095109.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR4339879-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR4339879.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR4340274-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR4340274.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR4782254-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR4782254.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5056303-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5056303.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5132384-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5132384.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5201683-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5201683.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5495100-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5495100.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5527082-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5527082.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5620467-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5620467.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5769010-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5769010.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5860573-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5860573.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5863004-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5863004.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5875655-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5875655.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR5878339-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5878339.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR611174-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR611174.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR620242-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR620242.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR747928-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR747928.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR748049-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR748049.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR836315-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR836315.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR847379-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR847379.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR940268-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR940268.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR941879-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR941879.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-animal-mitogenome/K39/SRR955308-animal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR955308.novoplasty.config.txt
cd ${RUN_PATH}