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9-1.assembling_50_fungal_mitogenomes_using_NOVOPlasty.sh
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9-1.assembling_50_fungal_mitogenomes_using_NOVOPlasty.sh
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# get RUN_PATH
RUN_PATH="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
echo $RUN_PATH
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5754079-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5754079.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5764827-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5764827.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5764829-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5764829.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5764835-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5764835.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5765276-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5765276.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5765278-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5765278.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5801929-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5801929.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5801932-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5801932.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5801933-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5801933.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5801934-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5801934.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5801935-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5801935.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5801943-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5801943.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5801947-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5801947.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5802125-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5802125.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5802181-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5802181.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5802411-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5802411.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5802413-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5802413.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5802419-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5802419.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5802698-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5802698.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803890-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803890.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803905-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803905.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803909-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803909.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803913-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803913.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803916-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803916.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803922-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803922.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803923-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803923.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803926-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803926.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803928-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803928.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803930-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803930.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5803933-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5803933.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804015-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804015.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804017-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804017.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804018-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804018.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804020-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804020.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804023-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804023.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804112-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804112.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804115-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804115.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804118-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804118.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804119-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804119.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804120-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804120.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804127-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804127.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804130-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804130.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804131-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804131.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804137-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804137.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804139-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804139.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804145-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804145.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804147-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804147.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804153-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804153.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804157-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804157.novoplasty.config.txt
cd ${RUN_PATH}/NOVOPlasty-fungal-mitogenome/K39/SRR5804159-fungal-mitogenome
perl ../../../NOVOPlasty/NOVOPlasty2.7.2.pl -c SRR5804159.novoplasty.config.txt
cd ${RUN_PATH}