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CMakeLists.txt
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CMakeLists.txt
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cmake_minimum_required(VERSION 3.12)
project (AMPE C CXX Fortran)
set(CMAKE_CXX_STANDARD 11)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
set(CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/cmake_modules)
find_package(MPI)
if(MPI_FOUND)
message(STATUS
"MPI was found:\n"
" MPI_CXX_COMPILER: ${MPI_CXX_COMPILER}\n"
" MPIEXEC_NUMPROC_FLAG: ${MPIEXEC_NUMPROC_FLAG}\n"
" MPIEXEC_MAX_NUMPROCS: ${MPIEXEC_MAX_NUMPROCS}\n"
" MPIEXEC: ${MPIEXEC}\n"
)
endif()
if(DEFINED MPI_EXEC)
set(MPIEXEC ${MPI_EXEC})
endif()
message(STATUS "MPIEXEC: ${MPIEXEC}\n")
set(HDF5_USE_STATIC_LIBRARIES ON)
find_package(HDF5 COMPONENTS C HL REQUIRED)
message(STATUS ${HDF5_VERSION} )
include_directories(${HDF5_INCLUDE_DIR})
message(STATUS "hdf5 libraries: ${HDF5_LIBRARIES}")
set(PROJECT_LINK_LIBS_HDF5 ${HDF5_HL_LIBRARIES} ${HDF5_LIBRARIES})
message(STATUS "hdf5 libraries: ${PROJECT_LINK_LIBS_HDF5}")
find_package(PkgConfig REQUIRED)
pkg_check_modules(NetCDF netcdf-cxx4 IMPORTED_TARGET)
if(NetCDF_FOUND)
message(STATUS "NETCDF link flags: ${NetCDF_LDFLAGS}")
set(PROJECT_LINK_LIBS_NETCDF ${NetCDF_LDFLAGS})
message(STATUS "NETCDF include directory: ${NetCDF_INCLUDE_DIRS}")
include_directories(${NetCDF_INCLUDE_DIRS})
else()
find_package(NetCDF REQUIRED COMPONENTS CXX)
set( PROJECT_LINK_LIBS_NETCDF NetCDF::NetCDF_CXX )
endif()
find_package(Boost)
if(Boost_FOUND)
include_directories(${Boost_INCLUDE_DIRS})
endif()
# gpu offload (optional)
set(GPU_OFFLOAD FALSE CACHE BOOL "GPU offload")
if(${GPU_OFFLOAD})
add_definitions(-DGPU_OFFLOAD)
endif()
# clang-format (optional)
set(AMPE_WITH_CLANG_FORMAT FALSE CACHE BOOL "Indent code with clang-format")
if(${AMPE_WITH_CLANG_FORMAT})
find_program(CLANG_FORMAT_EXECUTABLE
NAMES clang-format
DOC "clang-format executable")
mark_as_advanced(CLANG_FORMAT_EXECUTABLE)
if(CLANG_FORMAT_EXECUTABLE)
message(STATUS "Indent with clang-format")
file(GLOB_RECURSE FORMAT_SOURCES source/*.cc source/*.h
tests/*.cc tests/*.h
drivers/*.cc drivers/*.h)
add_custom_target(format
COMMAND ${CLANG_FORMAT_EXECUTABLE} -i -style=file ${FORMAT_SOURCES}
DEPENDS ${FORMAT_SOURCES})
endif(CLANG_FORMAT_EXECUTABLE)
endif()
include(FortranCInterface)
FortranCInterface_HEADER(
fc_samrai_mangle.h
MACRO_NAMESPACE "FC_SAMRAI_"
SYMBOLS
ADJUSTRHS2D
ADJUSTRHS3D
ADJBDRYCONSTOFFDIAGS2D
COMPDIAGVARIABLEC2D
COMPDIAGVARIABLEC3D
COMPDIAGSCALARC2D
COMPDIAGSCALARC3D
COMPDIAGZEROC2D
COMPDIAGZEROC3D
MULTIPLYOFFDIAGBYM
EFO_COMPFLUXVARDC2D
EFO_RBGSWITHFLUXMAXVARDCVARSF2D
EFO_RBGSWITHFLUXMAXCONDCVARSF2D
EFO_RBGSWITHFLUXMAXVARDCCONSF2D
EFO_RBGSWITHFLUXMAXCONDCCONSF2D
EFO_COMPRESVARSCA2D
EFO_COMPRESCONSCA2D
ACCUMOPVARSCA2D
ACCUMOPCONSCA2D
EFO_EWINGFIXFLUXVARDC2D
EFO_EWINGFIXFLUXCONDC2D
EFO_COMPFLUXVARDC3D
EFO_RBGSWITHFLUXMAXVARDCVARSF3D
EFO_RBGSWITHFLUXMAXCONDCVARSF3D
EFO_RBGSWITHFLUXMAXVARDCCONSF3D
EFO_RBGSWITHFLUXMAXCONDCCONSF3D
EFO_COMPRESVARSCA3D
EFO_COMPRESCONSCA3D
ACCUMOPVARSCA3D
ACCUMOPCONSCA3D
EFO_EWINGFIXFLUXVARDC3D
EFO_EWINGFIXFLUXCONDC3D
)
FortranCInterface_HEADER(
fc_functions_mangle.h
MACRO_NAMESPACE "FC_FUNCTIONS_"
SYMBOLS
WELL_FUNC
DERIV_WELL_FUNC
SECOND_DERIV_WELL_FUNC
INTERP_FUNC
DERIV_INTERP_FUNC
SECOND_DERIV_INTERP_FUNC
AVERAGE_FUNC
DERIV_AVERAGE_FUNC
INTERP_RATIO_FUNC
COMPL_INTERP_RATIO_FUNC
DERIV_TRIPLE_WELL_FUNC
)
FortranCInterface_HEADER(
fc_internal_mangle.h
MACRO_NAMESPACE "FC_INTERNAL_"
SYMBOLS
AB_DIFFUSION_OF_TEMPERATURE
CONCENTRATIONFLUX
ADD_FLUX
ADD_FLUX_ISO
ADD_FLUX_4TH
ADDRBMOTION
CONCENTRATIONFLUX_SPINODAL
CONCENTRATION_PFMDIFFUSION
CONCENTRATION_PFMDIFFUSION_THREEPHASES
CONCENTRATION_PFMDIFFUSION_OF_TEMPERATURE
CONCENTRATION_PFMDIFFUSION_OF_TEMPERATURE_THREEPHASES
CONCENTRATION_PFMDIFFUSION_OF_TEMPERATURE_MULTIPHASES
CONCENTRATION_DIFFCOEFF_OF_TEMPERATURE
CONCENTRATIONDIFFUSION_BECKERMANN
COMPUTERHSCONCENTRATION
PHASERHS_FENERGY
PHASERHS_FENERGY_MULTIORDERP
PHIPHI_INTERFACIALENERGY
PHIPHI_FORCES
WANG_FORCES
ETARHS_FENERGY
CALPHAD_CONC_SOLV_THREE
CALPHAD_CONC_SOLV_TWO
CALPHAD_CONC_CEQ_TWO
ADDCONCENTRATIONFLUXFROMGRADT
ADDCONCENTRATIONFLUXFROMANTITRAPPING
ADDCONCENTRATIONFLUXFROMANTITRAPPING3PHASES
ADDCONCENTRATIONFLUXFROMANTITRAPPINGMULTIORDERP
INITGAUSSIAN
INITGRADIENT
INITGAUSSIANSOURCE
LINEARMELTINGLINE
COMPUTE_CONCENTRATION_FROM_PHASE_CONCENTRATIONS
SINGLE_INDEX_STIFFNESS
STORAGE_INDEX_STIFFNESS
SINGLE_INDEX_STIFFNESS
STORAGE_INDEX_STIFFNESS
GRADIENT_FLUX
COMPUTE_FLUX_ISOTROPIC
ANISOTROPIC_GRADIENT_FLUX
COMPUTERHSPBG
COMPUTERHSTHREEPHASES
COMPUTERHSMULTIORDER
ADDVDPHIDX
ADDVDPHIDX_UPWIND3
COMPUTERHSTEMP
COMPUTERHSBIASWELL
COMPUTERHSBIASWELLBECKERMANN
COMPUTERHSDELTATEMPERATURE
COMPUTERHSETA
DIFFS
GRAD_CELL
GRAD_SIDE
GRAD_SIDE_ISOTROPIC
QUAT_SYMM_ROTATION
QUAT_FUNDAMENTAL
QUATDIFFS
QUATDIFFS_SYMM
QUATGRAD_CELL
QUATGRAD_CELL_SYMM
QUATGRAD_SIDE
QUATGRAD_SIDE_SYMM
QUATGRAD_SIDE_SYMM_ISOTROPIC
QUATGRAD_SIDE_ISOTROPIC
QUATGRAD_MODULUS
QUATGRAD_MODULUS_FROM_SIDES
QUATGRAD_MODULUS_FROM_SIDES_COMPACT
QUATDIFFUSION
QUATDIFFUSIONDERIV
CORRECTRHSQUATFORSYMMETRY
TAGFROMGRADS
TAGFROMQUATGRADS
QUATMOBILITY
QUATMOBILITYDERIV
QUATENERGY
BULKENERGY
TEMPERATURE_ENERGY
QUATAVG
SMOOTHQUAT
SETTOZERO
SOURCE_TEMPERATURE
HEAT_CAPACITY_NKR
VELOCITY
COMPUTE_FACE_COEF2D
COMPUTE_FACE_COEF3D
COMPUTE_DQUATDPHI_FACE_COEF2D
COMPUTE_DQUATDPHI_FACE_COEF3D
COMPUTE_FLUX2D
COMPUTE_FLUX3D
COMPUTE_FLUX2D_FROM_GRADQ
COMPUTE_FLUX3D_FROM_GRADQ
COMPUTE_SYM_FLUX2D
COMPUTE_SYM_FLUX3D
COMPUTE_Q_RESIDUAL2D
COMPUTE_Q_RESIDUAL3D
COMPUTE_Q_RESIDUAL2D_SYMM
COMPUTE_Q_RESIDUAL3D_SYMM
ADD_QUAT_OP2D
ADD_QUAT_OP3D
ADD_QUAT_PROJ_OP2D
ADD_QUAT_PROJ_OP3D
ADD_QUAT_PROJ_OP2D_SYMM
ADD_QUAT_PROJ_OP3D_SYMM
COMPUTE_LAMBDA_FLUX2D
COMPUTE_LAMBDA_FLUX3D
COMPUTE_LAMBDA_FLUX2D_SYMM
COMPUTE_LAMBDA_FLUX3D_SYMM
FIXFLUX2D
FIXFLUX3D
PROJECT2D
PROJECT3D
PROJECTPHI2D
PROJECTPHI3D
TAKE_SQUARE_ROOT2D
TAKE_SQUARE_ROOT3D
MULTICOMPONENT_MULTIPLY2D
MULTICOMPONENT_MULTIPLY3D
MULTICOMPONENT_DIVIDE2D
MULTICOMPONENT_DIVIDE3D
QUATLINREFINE2D
QUATLINREFINE3D
SET_J_IJ2D
SET_J_IJ3D
SET_STENCIL2D
SET_STENCIL3D
SET_SYMMETRIC_STENCIL2D
SET_SYMMETRIC_STENCIL3D
SIDE2CELL
COPY2D
COPY3D
ADJUST_BDRY2D
ADJUST_BDRY3D
ADJUST_QRHS2D
ADJUST_QRHS3D
QUATCOARSEN
COMPUTEDPHIDTEMPERATUREDELTATEMPERATURE
)
message(STATUS "Use THERMO4PFM...")
message(STATUS "THERMO4PFM_DIR = ${THERMO4PFM_DIR}")
set( PROJECT_LINK_LIBS_THERMO4PFM libthermo4pfm.a)
link_directories( ${THERMO4PFM_DIR}/lib )
include_directories( ${THERMO4PFM_DIR}/include )
if(${WITH_TLOGT4L})
add_definitions(-DMAX_POL_T_INDEX=3)
else()
add_definitions(-DMAX_POL_T_INDEX=2)
endif(${WITH_TLOGT4L})
include_directories( source/samrai)
set(internal_samrai ampe_samrai)
include_directories("${CMAKE_CURRENT_BINARY_DIR}")
link_directories( ${SAMRAI_DIR}/lib )
if(EXISTS ${HYPRE_DIR}/lib64)
link_directories( ${HYPRE_DIR}/lib64 )
else()
link_directories( ${HYPRE_DIR}/lib )
endif()
if(EXISTS ${SUNDIALS_DIR}/lib64)
link_directories( ${SUNDIALS_DIR}/lib64 )
else()
link_directories( ${SUNDIALS_DIR}/lib )
endif()
list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_LIST_DIR}/cmake_modules")
set( PROJECT_LINK_LIBS1 libSAMRAI_tbox.a )
set( PROJECT_LINK_LIBS2 libSAMRAI_math.a )
set( PROJECT_LINK_LIBS3 libSAMRAI_hier.a )
set( PROJECT_LINK_LIBS4 libSAMRAI_pdat.a )
set( PROJECT_LINK_LIBS5 libSAMRAI_xfer.a )
set( PROJECT_LINK_LIBS6 libSAMRAI_geom.a )
set( PROJECT_LINK_LIBS7 libSAMRAI_mesh.a )
set( PROJECT_LINK_LIBS8 libSAMRAI_solv.a )
set( PROJECT_LINK_LIBS9 libSAMRAI_appu.a )
set( PROJECT_LINK_LIBS_SAMRAI ${PROJECT_LINK_LIBS9}
${PROJECT_LINK_LIBS8}
${PROJECT_LINK_LIBS7}
${PROJECT_LINK_LIBS6}
${PROJECT_LINK_LIBS5}
${PROJECT_LINK_LIBS4}
${PROJECT_LINK_LIBS3}
${PROJECT_LINK_LIBS2}
${PROJECT_LINK_LIBS1} )
set( PROJECT_LINK_LIBS_HYPRE libHYPRE.so )
message(STATUS "Link with Sundials...")
set( PROJECT_LINK_LIBS_CVODE libsundials_cvode.a )
include_directories( ${SAMRAI_DIR}/include )
include_directories( ${HYPRE_DIR}/include )
include_directories( ${SUNDIALS_DIR}/include )
include_directories( source/fortran )
enable_testing()
add_definitions(-DNDIM=${NDIM})
enable_language(Fortran C CXX)
set(CMAKE_CXX_FLAGS_DEBUG "-O0 -g -std=c++11")
if(CMAKE_C_COMPILER_ID STREQUAL "XL")
set( CMAKE_CXX_FLAGS_RELEASE "-O -DNDEBUG")
message(STATUS "Override C++ release flags: ${CMAKE_CXX_FLAGS_RELEASE}\n")
endif()
add_subdirectory(source)
add_subdirectory(drivers)
add_subdirectory(tests)