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TaxonMatch

TaxonMatch is a Python package designed for facilitating the analysis, comparison, and visualization of taxonomic data. It provides robust tools for downloading, processing, analyzing, matching taxonomic datasets, and utilities for generating taxonomic trees.

Installation

You can install TaxonMatch directly from GitHub using pip:

pip install git+https://github.com/MicheleRoar/TaxonMatch.git

Features

  • Data Downloading: Automate the downloading of taxonomic data from various sources.
  • Analysis Utilities: Tools for processing and analyzing taxonomic data.
  • Model Training: Functions to train models on taxonomic data.
  • Matching Algorithms: Tools for matching and comparing different taxonomic datasets.
  • Tree Utilities: Create and manage taxonomic trees for visualization and analysis.

Structure

The package is structured as follows:

taxonmatch/
│
├── taxonmatch/
│ ├── init.py
│ ├── downloader.py
│ ├── analysis_utils.py
│ ├── model_training.py
│ ├── matching.py
│ ├── tree_utils.py
│ └── ...
│
├── tests/
│ ├── test_downloader.py
│ ├── test_data_processing.py
│ └── ...
│
├── setup.py
├── README.md
└── requirements.txt

Usage

Import and use various components of the package as needed:

from taxonmatch import downloader, analysis_utils, model_training

Testing

To run tests, navigate to the root directory of the project and execute:

python -m unittest

Contributing

Contributions to TaxonMatch are welcome! Please refer to the CONTRIBUTING.md file for guidelines on how to contribute to this project.

License

This project is licensed under the MIT License.

Contact

For any queries or feedback, please contact [email protected]