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mkdocs.yml
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mkdocs.yml
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site_name: NextITS
site_author: Vladimir Mikryukov
site_description: A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio.
copyright: "Copyright © 2022 Vladimir Mikryukov. All rights reserved."
site_url: https://Next-ITS.github.io/
repo_url: https://github.com/vmikk/NextITS
theme:
name: material
palette:
- scheme: default
primary: indigo
accent: indigo
toggle:
icon: material/weather-sunny
name: Switch to dark mode
- scheme: slate
primary: indigo
accent: indigo
toggle:
icon: material/weather-night
name: Switch to light mode
favicon: assets/favicon.ico
logo: assets/NextITS_logo.webp
font:
text: 'Ubuntu'
code: 'Ubuntu Mono'
features:
- content.code.copy
markdown_extensions:
- attr_list
- md_in_html
- footnotes
- admonition
- toc:
permalink: True
- def_list
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.critic
- pymdownx.caret
- pymdownx.keys
- pymdownx.mark
- pymdownx.tilde
- pymdownx.highlight:
anchor_linenums: true
- pymdownx.inlinehilite
- pymdownx.snippets
- pymdownx.superfences
nav:
- 'Introduction': 'index.md'
- 'Installation': 'installation.md'
- 'Quick start': 'quickstart.md'
- 'Usage instructions': 'usage.md'
- 'Parameters': 'parameters.md'
- 'Usage on HPC cluster': 'HPC.md'