Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Phase retrieval example #240

Open
tomhaeck0 opened this issue Jul 9, 2021 · 1 comment
Open

Phase retrieval example #240

tomhaeck0 opened this issue Jul 9, 2021 · 1 comment

Comments

@tomhaeck0
Copy link

Hi,
I would like to leverage Pylops for the domain of 'phase retrieval', but I don't know how to start on this. A typical phase retrieval problem has the following form:

|| y - | F^-1{ K * F{x}} | ||^2 + lam || |x| ||^1

y is a measured real-valued 2D image
x is an unknown complex-valued 2D image
F and F^-1 are the forward and backward 2D Fourier transforms
K is a complex-valued 2D kernel (predefined dense matrix), defined in Fourier domain

So, intuitively, complex-valued 2D image x is 2D convoluted (by multiplication in Fourier domain) and only the magnitude is fitted to the known real-valued 2D image y. This problem is ill-posed, and needs regularization. I would e.g. like to add a sparsity prior on the magnitude of x and solve this using a Split-bregman solver or ISTA solver.

Would it be possible for you to provide a minimal example script that does just that, to point me in the right direction?

@mrava87
Copy link
Collaborator

mrava87 commented Jul 9, 2021

Hi @tomhaeck0,
interesting problem and definitely something pylops can solve :)

Here is a skeleton code to get you going (however I have a couple of questions/comments below):

import numpy as np
import matplotlib.pyplot as plt

from pylops.utils import dottest
from pylops.basicoperators   import *
from pylops.signalprocessing import *
from pylops.optimization.sparsity  import *

# Model
nx, ny = 20, 30
x = np.zeros(nx*ny) + 1j * np.zeros(nx*ny)
ipos = np.random.permutation(np.arange(nx*ny))[:100]
x[ipos] = np.random.normal(0, 1, 100) + 1j * np.random.normal(0, 1, 100)
x = x.reshape(nx, ny)

# Fourier operator
F = FFT2D(dims=(nx,ny), nffts=(nx,ny))

# Filtering operator
h = np.ones((2,2), dtype=np.complex)
K = Convolve2D(nx*ny, h, dims=(nx,ny), dtype=np.complex128)

# or Dense operator
#h = np.random.normal(0., 1., (nx*ny, nx*ny)) + 1j * np.random.normal(0., 1., (nx*ny, nx*ny))
#K = MatrixMult(h, dtype=np.complex128)

# Total operator
Op = F.H * K * F
Op = Op.toreal(forw=True, adj=False)

# Data
y = Op * x.ravel()
y  = y.reshape(nx, ny)

# Inverse
xinv = FISTA(Op, y.ravel(), eps=0.01, niter=1000, show=True)[0]
xinv = xinv.reshape(nx, ny)

plt.figure()
plt.imshow(np.abs(x), vmin=-1, vmax=1)

plt.figure()
plt.imshow(np.abs(y), vmin=-1, vmax=1)

plt.figure()
plt.imshow(np.abs(x)-np.abs(y), vmin=-1, vmax=1)
  1. I wasn't sure how to interpret your definition of K, if its a dense matrix representing 2D FFT of a blurring filter in the original domain or if its a blurring filter in that domain (I gave you both options).
  2. Regarding the solver I suggest FISTA. Split-Bregman makes only sense for more complex regularizations, say for example you want to minimize the TV(x) but for the L1 norm of x it is much faster to use FISTA

The x and y here are just random numbers, would be good to see how things work with your data, which are likely more meaningful :) Let us know how it goes!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants