Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Not able to build dexseq/v1.30.0/Dockerfile #3

Open
cmball1 opened this issue Feb 24, 2020 · 0 comments
Open

Not able to build dexseq/v1.30.0/Dockerfile #3

cmball1 opened this issue Feb 24, 2020 · 0 comments
Assignees

Comments

@cmball1
Copy link
Contributor

cmball1 commented Feb 24, 2020

Not able to build the Dockerfile dexseq/v1.30.0/Dockerfile:

Collecting pysam
  Downloading https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz (1.6MB)
    Complete output from command python setup.py egg_info:
    # pysam: no cython available - using pre-compiled C
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-build-mVBXzi/pysam/setup.py", line 193, in <module>
        .format(fn))
    ValueError: no cython installed, but can not find pysam/libchtslib.c.Make sure that cython is installed when building from the repository
    
    ----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-mVBXzi/pysam/
The command '/bin/sh -c apt-get update     && apt-get install -y --no-install-recommends         python-dev         python-pip     && pip install setuptools     && pip install wheel     && pip install pysam     && pip install HTSeq     && apt-get autoremove     && rm -rf /var/lib/apt/lists/*' returned a non-zero code: 1

See GitHub Actions run for more info: https://github.com/RTIInternational/biocloud_docker_tools/runs/465555645?check_suite_focus=true

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants