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Bonus point: add secondary structure directly into the BED file as an additional field using the BED detail format. See RT90465 for background. Unfortunately I could not track down the code that was used for that ticket.
The text was updated successfully, but these errors were encountered:
The Rfam track hubs are currently updated only at major releases and the procedure is not automated.
We need to develop a NextFlow pipeline that takes GCA/GCF accessions as input and does the following:
-Z
for each genome as explained in Rfam docs.tblout
and the original cmsearch.out
files can be gzipped and stored on FTP.tblout
files can be used to generate a trackhub using tblout2bigBed.pl or tblout2bigBedGenomes.plBonus point: add secondary structure directly into the BED file as an additional field using the
BED detail
format. See RT90465 for background. Unfortunately I could not track down the code that was used for that ticket.The text was updated successfully, but these errors were encountered: