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<!DOCTYPE html>
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<title>Repeated Measures in Time</title>
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<h1 class="title toc-ignore">Repeated Measures in Time</h1>
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<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="co"># packages</span></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>pacman<span class="sc">::</span><span class="fu">p_load</span>(conflicted, <span class="co"># package function conflicts</span></span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a> dplyr, purrr, tibble, tidyr, stringr, <span class="co"># data handling</span></span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a> gganimate, ggplot2, gifski, viridis, <span class="co"># plot</span></span>
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a> nlme, lme4, glmmTMB, sommer, <span class="co"># mixed modelling</span></span>
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a> AICcmodavg, mixedup) <span class="co"># mixed model extractions</span></span>
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a><span class="co"># package function conflicts</span></span>
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a><span class="fu">conflict_prefer</span>(<span class="st">"filter"</span>, <span class="st">"dplyr"</span>)</span>
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a><span class="co"># data</span></span>
<span id="cb1-12"><a href="#cb1-12" aria-hidden="true" tabindex="-1"></a>dat <span class="ot"><-</span> agriTutorial<span class="sc">::</span>sorghum <span class="sc">%>%</span></span>
<span id="cb1-13"><a href="#cb1-13" aria-hidden="true" tabindex="-1"></a> <span class="fu">rename</span>(<span class="at">block =</span> Replicate, <span class="at">plot =</span> factplot) <span class="sc">%>%</span> </span>
<span id="cb1-14"><a href="#cb1-14" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">select</span>(y, variety, block, plot, factweek, varweek) <span class="sc">%>%</span> </span>
<span id="cb1-15"><a href="#cb1-15" aria-hidden="true" tabindex="-1"></a> <span class="fu">as_tibble</span>()</span></code></pre></div>
<div style="border: 1px solid #ddd; padding: 0px; overflow-y: scroll; height:200px; ">
<table class="table table-bordered table-hover table-condensed table-responsive" style="width: auto !important; margin-left: auto; margin-right: auto;">
<thead>
<tr>
<th style="text-align:right;position: sticky; top:0; background-color: #FFFFFF;">
y
</th>
<th style="text-align:left;position: sticky; top:0; background-color: #FFFFFF;">
variety
</th>
<th style="text-align:left;position: sticky; top:0; background-color: #FFFFFF;">
block
</th>
<th style="text-align:left;position: sticky; top:0; background-color: #FFFFFF;">
plot
</th>
<th style="text-align:left;position: sticky; top:0; background-color: #FFFFFF;">
factweek
</th>
<th style="text-align:right;position: sticky; top:0; background-color: #FFFFFF;">
varweek
</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align:right;">
5.00
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:right;">
1
</td>
</tr>
<tr>
<td style="text-align:right;">
4.84
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:right;">
2
</td>
</tr>
<tr>
<td style="text-align:right;">
4.02
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:right;">
3
</td>
</tr>
<tr>
<td style="text-align:right;">
3.75
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:right;">
4
</td>
</tr>
<tr>
<td style="text-align:right;">
3.13
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
5
</td>
<td style="text-align:right;">
5
</td>
</tr>
<tr>
<td style="text-align:right;">
4.42
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:right;">
1
</td>
</tr>
<tr>
<td style="text-align:right;">
4.30
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:right;">
2
</td>
</tr>
<tr>
<td style="text-align:right;">
3.67
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:right;">
3
</td>
</tr>
<tr>
<td style="text-align:right;">
3.23
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:right;">
4
</td>
</tr>
<tr>
<td style="text-align:right;">
2.83
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:left;">
5
</td>
<td style="text-align:right;">
5
</td>
</tr>
<tr>
<td style="text-align:right;">
4.42
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:right;">
1
</td>
</tr>
<tr>
<td style="text-align:right;">
4.10
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:right;">
2
</td>
</tr>
<tr>
<td style="text-align:right;">
3.46
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:right;">
3
</td>
</tr>
<tr>
<td style="text-align:right;">
3.09
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:right;">
4
</td>
</tr>
<tr>
<td style="text-align:right;">
2.82
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:left;">
5
</td>
<td style="text-align:right;">
5
</td>
</tr>
<tr>
<td style="text-align:right;">
4.01
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:right;">
1
</td>
</tr>
<tr>
<td style="text-align:right;">
3.89
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:right;">
2
</td>
</tr>
<tr>
<td style="text-align:right;">
3.21
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
3
</td>
<td style="text-align:right;">
3
</td>
</tr>
<tr>
<td style="text-align:right;">
2.89
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:right;">
4
</td>
</tr>
<tr>
<td style="text-align:right;">
2.56
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
4
</td>
<td style="text-align:left;">
5
</td>
<td style="text-align:right;">
5
</td>
</tr>
<tr>
<td style="text-align:right;">
3.36
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
5
</td>
<td style="text-align:left;">
5
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:right;">
1
</td>
</tr>
<tr>
<td style="text-align:right;">
3.10
</td>
<td style="text-align:left;">
1
</td>
<td style="text-align:left;">
5
</td>
<td style="text-align:left;">
5
</td>
<td style="text-align:left;">
2
</td>
<td style="text-align:right;">
2
</td>
</tr>
<tr>
<td style="text-align:right;">
2.67
</td>
<td style="text-align:left;">