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Taiji.cabal
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Taiji.cabal
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name: Taiji
version: 1.3.1.2
synopsis: Multi-omics bioinformatics analysis pipeline
description: Taiji is an integrated multi-omics bioinformatics analysis
pipeline. It can analyze ATAC-seq, RNA-seq, single cell
ATAC-seq, single cell RNA-seq datasets as well as
integrated analysis of different kinds of data.
homepage: https://taiji-pipeline.github.io/
license: BSD3
license-file: LICENSE
author: Kai Zhang
maintainer: [email protected]
copyright: (c) 2017-2022 Kai Zhang
category: Bio
build-type: Simple
extra-source-files:
README.md
ChangeLog.md
cabal-version: >=1.10
library
hs-source-dirs: src
ghc-options: -Wall
-fno-warn-unticked-promoted-constructors
exposed-modules: Taiji.Core
Taiji.Core.RegulatoryElement
Taiji.Core.Network
Taiji.Core.Network.DeNovo
Taiji.Core.Network.External
Taiji.Core.Ranking
Taiji.SingleCell
build-depends: base >= 4.7 && < 5
, aeson
, bbi
, bytestring
, bio-pipelines >= 0.1.2
, bio-experiments
, bioinformatics-toolkit >= 0.9.5
, containers
, clustering
, double-conversion
, deepseq
, unordered-containers
, case-insensitive
, conduit
, data-default-class
, data-ordlist
, haskell-igraph >= 0.7.1
, hashable
, IntervalMap
, matrices
, mtl
, singletons >= 2.5
, statistics >= 0.14.0
, SciFlow >= 0.7.2
, temporary
, text
, vector
, vector-algorithms
, zlib
, Taiji-utils >= 0.1.1
, Taiji-scATAC-seq >= 0.2.0
default-language: Haskell2010
executable taiji
hs-source-dirs: app
main-is: Main.hs
ghc-options: -threaded
-rtsopts
-Wall
-fno-warn-orphans
-- ghc-options: -threaded -Wall -optl-static -optc-static -optl-pthread
other-modules: Paths_Taiji
build-depends: base
, SciFlow >= 0.7.1
, SciFlow-app
, SciFlow-remote
, data-default
, bio-pipelines
, text
, Taiji
, Taiji-ATAC-seq
, Taiji-RNA-seq
, Taiji-scRNA-seq
, Taiji-scATAC-seq
, Taiji-fusion
, Taiji-utils
, unordered-containers
, yaml
default-language: Haskell2010
source-repository head
type: git
location: https://github.com/Taiji-pipeline/Taiji.git