If you use cath-tools, please star the GitHub repo and cite it in any related publications.
If you use cath-ssap in your work, please cite the following in any related publications:
"Protein Structure Alignment", Taylor and Orengo [1989]
Journal of Molecular Biology 208, 1-22
PMID: 2769748
Algorithm devised by Christine A Orengo and William R Taylor
Many people have contributed to this code, most notably:
- Tony E Lewis ( 2011 - ....)
- Oliver C Redfern (~ 2003 - 2011)
- James E Bray, Ian Sillitoe (~ 2000 - 2003)
- Andrew C R Martin (considerable edits around 2001)
cath-cluster uses Fionn Murtagh's reciprocal-nearest-neighbour algorithm (see Multidimensional clustering algorithms, volume 4 of Compstat Lectures.
Physica-Verlag, Würzburg/ Wien, 1985. ISBN 3-7051-0008-4) as described and refined in Daniel Müllner's Modern hierarchical, agglomerative clustering algorithms (2011, arXiv:1109.2378).