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Dockerfile
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# See: https://github.com/VirusTrack/COVIDvu/blob/master/LICENSE
# vim: set fileencoding=utf-8:
# https://hub.docker.com/r/jupyter/datascience-notebook/
FROM jupyter/datascience-notebook:latest
MAINTAINER [email protected]
USER root
RUN apt-get update && \
apt-get -y upgrade && \
apt-get -y install \
awscli \
colordiff \
dnsutils \
git \
jq \
rclone \
ssh \
tree \
vim
# The goal is to move away from all Conda dependencies, however
# that cannot happen at this point because the Jupyter Data
# Science image (parent in FROM above) currently relies on this.
#
# Note: pip needs to be after any Conda changes whereas those changes
# have no relationship to the overall pip state.
RUN conda install --quiet --yes \
mkl
# update conda itself
RUN conda update -n base conda
COPY resources/_bash_profile /root/.bash_profile
USER jovyan
RUN pip install -U \
devpi-client \
jupyter_contrib_nbextensions \
jupyter_nbextensions_configurator \
pre-commit \
pudb \
pyflakes \
pytest
RUN jupyter contrib nbextension install --user
COPY resources/_bash_profile /home/jovyan/.bash_profile