There maybe something wrong?

[tb1over]

The element of Mk[i_] greater than elemet of Is elment ?

[ZigaSajovic]

Please provide a minimal reproducible example, so I can make sense of your issue.

[tb1over]

Thank you for your reply， i uploaded the dataset here.
The usage code like this:

`
import os
import os.path as osp
import pandas as pd
from sklearn.cluster import KMeans

import warnings
warnings.filterwarnings('ignore')

from concensusClustering import *

current_path = osp.dirname(os.getcwd())
dataset = 'dataset/breast/TCGA-BRCA.mirna.flt.tsv.gz'

def main():
mirna = pd.read_csv(osp.join(current_path, dataset), sep='\t', header=0, index_col=0).T
print(mirna.shape)

consensusCluster = ConsensusCluster(KMeans, 3, 10, 50, resample_proportion=0.8)
consensusCluster.fit(mirna.values, verbose=True)
consensus_res = consensusCluster.predict()

res = consensusCluster.predict_data(mirna.values)
print(res)

if name == 'main':
main()
`

i set some breakpoints the observe the Mk[i_] and Is matrix, print the fist 5 elemet of two matrix.
Mk[i_,0:5,0:5] array([[ 0., 1., 2., 21., 0.], [ 1., 0., 15., 0., 0.], [ 1., 22., 0., 0., 0.], [15., 0., 0., 0., 1.], [ 0., 0., 0., 0., 0.]])
Mk[i_, 0, 3] is 21, the Is[0, 3] is 20

Is[0:5,0:5] array([[ 0., 18., 15., 20., 15.], [20., 0., 15., 13., 15.], [22., 22., 0., 20., 15.], [18., 25., 15., 0., 19.], [18., 19., 18., 16., 0.]])