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VariantAnnotator online document shows the wrong syntax. #8143

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vruano opened this issue Jan 4, 2023 · 0 comments · Fixed by #8145
Closed
1 task done

VariantAnnotator online document shows the wrong syntax. #8143

vruano opened this issue Jan 4, 2023 · 0 comments · Fixed by #8145

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@vruano
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vruano commented Jan 4, 2023

Bug Report

Affected tool(s) or class(es)

VariantAnnotator ... but this is due to an old syntax update perhaps other docs in other tools are also affected.

Affected version(s)

  • Latest public release version [version?]
  • [Presumptive] Latest master branch as of [date of test?]

Description

The argument --resource example(s) show a wrong syntax in regards to the location of the "provider" name

Steps to reproduce

Google 'GATK VariantAnnotator'; the first or one of the first hits points to the current GATK doc on the tool.

Expected behavior

The example should read --resource:foo resource-file.vcf.gz

Actual behavior

The example reads --resource foo:resource-file.vcf.gz

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