-
Notifications
You must be signed in to change notification settings - Fork 8
/
_pkgdown.yml
82 lines (65 loc) · 1.62 KB
/
_pkgdown.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
url: https://caravagnalab.github.io/mobster/
template:
bootstrap: 5
repo:
url:
home: https://github.com/caravagnalab/mobster/
source: https://github.com/caravagnalab/mobster
issue: https://github.com/caravagnalab/mobster/issues
user: https://github.com/caravagnalab
authors:
Giulio Caravagna:
href: https://sites.google.com/site/giuliocaravagna/
reference:
- title: Available data
desc: Data released with the package
contents:
- fit_example
- LU4_lung_sample
- LUFF76_lung_sample
- cancer_genes_dnds
- title: Fitting functions
desc: Functions to cluster the data; density of a `mobster` fit and sampling functions.
contents:
- mobster_fit
- choose_clusters
- Clusters
- Clusters_denovo
- ddbpmm
- rdbpmm
- random_dataset
- to_string
- title: S3 functions
desc: The `mobster` S3 object.
contents:
- print.dbpmm
- summary.dbpmm
- plot.dbpmm
- title: Plotting functions
desc: These functions can be used to plot data and `mobster` fits.
contents:
- plot_NLL
- plot_entropy
- plot_fit_scores
- plot_gofit
- plot_init
- plot_latent_variables
- plot_mixing_proportions
- plot_model_selection
- title: Bootstrap functions
desc: Bootstrap functions for `mobster` fits, and plotting functions.
contents:
- mobster_bootstrap
- bootstrapped_statistics
- plot_bootstrap_Beta
- plot_bootstrap_coclustering
- plot_bootstrap_mixing_proportions
- plot_bootstrap_model_frequency
- plot_bootstrap_tail
- title: Extra features
desc: Other analyses for `mobster` fits.
contents:
- dnds
- evolutionary_parameters
- get_clone_trees
- load_vcf