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Cannot save bad channels #89
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hi @cbin-cnl , did the problem of opening a file get solved on your end? |
Hi Luiz, Yes I can open the file and add channels, but the gui crashes once I try to save. The error message is below: |
thanks for the report! I'll check it |
@cbin-cnl it seems like you're not using the most updated code, could you please try installing the current repo version of EcogVIS in your working environment? $ pip uninstall ecogvis
$ git clone https://github.com/catalystneuro/ecogVIS.git
$ cd ecogVIS
$ pip install . I couldn't reproduce the error locally, this is probably because of some changes in ecogvis that were not published to pypi yet. If it's not urgent, you can also wait a couple of days max and I'll be releasing a new version, so you can upgrade through pip. |
Hi Luiz, thanks for the quick response. Unfortunately updating the code did not work, I still get the following error:
To clarify, I can open the file fine, but cannot save the channels unless the NWB file already has a "bad" electrodes column. Thanks again |
of course, I can see it now |
Great thanks so much! |
@cbin-cnl it took a bit, sorry, the merge is in place. |
Hi Luiz, Unfortunately it still looks like there is a problem with adding a column to an existing Electrode table. I'm getting the following error:
However, I think I can just ensure I have a "bad" channels column in my electrode table. Thank you. |
I'll get this fix, thanks for reporting it |
@cbin-cnl I managed to reproduce your error now |
Thanks Luiz, sorry just looking at this now. Thanks for making the change. Just wanted to check, the "save bad channels" button has been removed? Is the intention to just save a new NWB file with the bad channel annotation? |
@cbin-cnl that's correct. Do you have the specific need of saving it in the same file? |
Hi Luiz, no, that should be fine, just wanted to make sure that was the intention. |
Originally had the issue that I couldn't open a nwb file without a "bad" channel column, but it looks like that has been addressed in #85 , so I installed the newest version of ecogVIS using the "setup.py" file. Is there a way of saving bad channels without having an existing bad channels column?
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