snakemake-minimal

A minimal Snakemake pipeline. Clone this repository and add to it to define your analysis pipeline, i.e.,

git clone https:github.com/cnuahs/snakemake-minimal.git ./my-analysis.git
cd ./my-analysis.git
git remote add origin https://github.com/<username>/my-analysis.git

Notes:

You will need Snakemake. I recomend installing via miniconda, available for Windows, Mac and Linux.
If you're new to Snakemake, check out the tutorial.