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dragon.cc
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dragon.cc
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/**
* @file dragon.cc
* @author Luca Maccione
* @email [email protected]
* @brief Implementation of the DRAGON class. See the .h file
*/
#include "dragon.h"
#include "grid.h"
#include "nucleilist.h"
#include "galaxy.h"
#include "particle.h"
#include "xsec.h"
#include "crevolutor.h"
#include "input.h"
#include "utilities.h"
#include "sources.h"
#include "spectrum.h"
#include <iomanip>
#include <gsl/gsl_errno.h>
#include <gsl/gsl_spline.h>
#include <sys/stat.h> //sk for mkdir
#include <sys/types.h>
using namespace std;
DRAGON::DRAGON(Input* inputStructure_ /**< Wrapper to user input. */) {
inputStructure = inputStructure_;
const int feedback = inputStructure->feedback;
status = 0;
norm = 1.0;
normel = 0.0;
normextra = 0.0;
normDM = 0.0;
if (feedback>0) cout<<"Getting the nuclei list ..."<<endl;
nucleiList = new TNucleiList(inputStructure_);
if (feedback>0) cout<<"... done!"<<endl<<endl;
if (feedback>0) cout<<"Initializing the Galaxy ..."<<endl;
gal = new Galaxy(inputStructure_, nucleiList);
if (feedback >0) cout<<"... done!"<<endl<<endl;
if (feedback>0) cout<<"Initializing the Algorithm ..."<<endl;
if (inputStructure->gridtype == "2D") {
if (inputStructure->OpSplit) alg.push_back( new TCREvolutor(gal) );
if (inputStructure->ADI) alg.push_back( new TCREvolutorADI(gal) );
}
else {
if (inputStructure->OpSplit) alg.push_back( new TCREvolutor3D(gal) );
if (inputStructure->ADI) alg.push_back( new TCREvolutor3DADI(gal) );
}
if (feedback>0) cout<<"... done!"<<endl<<endl;
if (inputStructure->fullstore) {
string fullstoreFilename = make_filename(inputStructure->filename.c_str(), ".fits.gz");
if (fits_create_file(&output_ptr, fullstoreFilename.c_str(), &status)) fits_report_error(stderr, status);
} else output_ptr = NULL;
if (inputStructure->partialstore) {
string partialstoreFilename = make_filename(inputStructure->filename.c_str(), "_spectrum.fits.gz");
if (fits_create_file(&output_ptr_sp, partialstoreFilename.c_str(), &status)) fits_report_error(stderr, status);
} else output_ptr_sp = NULL;
if (inputStructure->asciistore) {
string asciiFilename = make_filename(inputStructure->filename.c_str(), ".txt");
}
}
DRAGON::~DRAGON() {
if (gal)
delete gal;
if (nucleiList)
delete nucleiList;
for (vector<TCREvolutorBasis*>::iterator i = alg.begin(); i != alg.end(); ++i)
delete *i;
alg.clear();
for (vector<TParticle*>::iterator i = particles.begin(); i != particles.end(); ++i)
delete *i;
particles.clear();
if (output_ptr) {
if (fits_close_file(output_ptr, &status))
fits_report_error(stderr, status);
}
if (output_ptr_sp) {
if (fits_close_file(output_ptr_sp, &status))
fits_report_error(stderr, status);
}
}
TParticle* DRAGON::FindParticle(int uid, bool sec, int isDM, int isextra) {
for (vector<TParticle*>::reverse_iterator ripart = particles.rbegin(); ripart != particles.rend(); ++ripart) {
if ( (*ripart)->GetUid() == uid && (*ripart)->GetIsSec() == sec && (*ripart)->IsDM() == isDM && (*ripart)->IsExtra() == isextra )
return *ripart;
}
return NULL;
}
vector<TParticle*> DRAGON::FindSpecies(int Z) {
vector<TParticle*> result;
for (vector<TParticle*>::reverse_iterator ripart = particles.rbegin(); ripart != particles.rend(); ++ripart) {
if ( (*ripart)->GetZ() == Z )
result.push_back(*ripart);
}
return result;
}
TParticle* DRAGON::CreateParticle(const string& grtype, int A_ /**< Mass number */, int Z_ /**< Charge */, Galaxy* gal /**< A model for the galaxy */, Input* in /**< User input */, bool issec, vector<TXSecBase*> xsecmodel, TNucleiList* l, int K_electron, bool isDM, bool isextra, bool isTPP_) {
if (grtype == "2D") return new TParticle2D(A_, Z_, gal, in, issec, xsecmodel, l, K_electron, isDM, isextra, isTPP_);
if (grtype == "3D") return new TParticle3D(A_, Z_, gal, in, issec, xsecmodel, l, K_electron, isDM, isextra, isTPP_);
return NULL;
}
//*****************************************************************************************************************************************
//******************************************** The main method of DRAGON ******************************************************************
//*****************************************************************************************************************************************
void DRAGON::Run() {
const int feedback = inputStructure->feedback;
if (feedback >0) cout<<"Loading cross sections ..."<<endl;
vector<TXSecBase*> xsecmodel;
xsecmodel.push_back(new TGalpropXSec(gal->GetCoordinates()));
if (feedback >1) cout<<"Galprop cross sections loaded"<<endl;
if (inputStructure->spallationxsec == Webber03)
xsecmodel.push_back(new TWebber03());
if (inputStructure->spallationxsec == Fluka) {
if (feedback >1) cout << "Fluka cross sections " << endl;
xsecmodel.push_back(new FlukaXSec(gal->GetCoordinates()));
}
if (feedback >0) cout<<"... done!"<<endl<<endl;
vector<int> list_nuc = nucleiList->GetList();
if (feedback >0) cout<<"Building the spallation network ..."<<endl;
TSpallationNetwork* spallnet = new TSpallationNetwork(gal->GetCoordinates(), inputStructure, xsecmodel, list_nuc);
if (feedback>0) cout<<"... done!"<<endl<<endl;
const string grty = inputStructure->gridtype;
//-- Loop over particle list!--------------------------------------------------------------------------------
for (vector<int>::iterator inuc = list_nuc.begin(); inuc != list_nuc.end(); ++inuc) {
int A = -1000;
int Z = -1000;
Utility::id_nuc(*inuc, A, Z); /**< Compute the ID of the nucleus. */
if (feedback >0) cout << "Propagating nucleus with A = " << A << " Z = " << Z << endl;
if (*inuc > 1000) { // nuclei
DECMODE decay_mode = nucleiList->GetDecayMode(*inuc);
double life = nucleiList->GetLifeTime(*inuc);
if (feedback>1){
if (decay_mode != STABLE) cout<<"Lifetime = "<<life*1e6<<" yr"<<endl;
else cout<<"Stable nucleus"<<endl;
if (decay_mode == EC || decay_mode == ECBM || decay_mode == ECBP) cout<<"Nucleus may attach an electron and decay via EC"<<endl;
}
if ((decay_mode != EC && decay_mode != ECBM && decay_mode != ECBP) || ((life*1e6 < t_half_limit) && !(inputStructure->Kcapture))) { //modified
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, -1, false, false)); /**< Creates the nucleus and add it to the particle vector. */
//cout << "Evolve" << endl;
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
if (*inuc == 1001) {
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, true, xsecmodel, nucleiList, -1, false, false)); /**< Creates the nucleus and add it to the particle vector. */
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
}
}
else { /* if the decay mode is K_capture and the lifetime is long enough */
if (feedback>0) cout<<"Since the lifetime is long enough, the nucleus is propagated twice"<<endl;
if (feedback>0) cout<<"Propagating naked nucleus"<<endl;
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, 0, false, false)); // naked nucleus. K_electron = 0
particles.back()->Evolve(particles, alg, spallnet, xsecmodel);
// prev_uid = particles.back()->GetUid();
if (feedback>0) cout<<"Propagating nucleus with an attached electron"<<endl;
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, 1, false, false)); // K_electron = 1
particles.back()->Evolve(particles, alg, spallnet, xsecmodel);
}
}
else {
if (*inuc == -999) {
// Antiprotons
if (inputStructure->prop_secap) {
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, -1, false, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, true, xsecmodel, nucleiList, -1, false, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
}
if (inputStructure->prop_DMap) {
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, -1, true, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, true, xsecmodel, nucleiList, -1, true, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
}
}
else if (*inuc == -998) {
// Antideuterons
if (inputStructure->prop_secdeuteron) {
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, -1, false, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, true, xsecmodel, nucleiList, -1, false, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
}
if (inputStructure->prop_DMdeuteron) {
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, -1, true, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, true, xsecmodel, nucleiList, -1, true, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
}
}
else {
// Leptons
if (inputStructure->prop_extracomp && *inuc == -1000) {
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, -1, false, true));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
}
if (inputStructure->prop_lep) {
// Secondary electron or positron
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, true, xsecmodel, nucleiList, -1, false, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
//TPP: positrons from TPP
if (*inuc == 1000 && inputStructure->prop_TPP) {
if (inputStructure->feedback >0) cout << "TPP positrons" << endl;
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, true, xsecmodel, nucleiList, -1, false,false,true));
if (inputStructure->feedback >0) cout << "Evolving TPP positrons " << endl;
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
}
// Primary electrons
if (*inuc == -1000) {
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, -1, false, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
}
}
if (inputStructure->prop_DMel && *inuc == -1000 ) {
if (inputStructure->feedback >0) cout << "DM electrons" << endl;
particles.push_back(CreateParticle(grty, A, Z, gal, inputStructure, false, xsecmodel, nucleiList, -1, true, false));
particles.back()->Evolve(particles, alg, spallnet, xsecmodel); /**< Evolve the nucleus. */
}
}
}
if (inputStructure->feedback >0) cout<<"... propagation done!"<<endl<<endl;
}
//-- End of loop over particle list!-----------------------------------------------------------------
//-- Second Run!--------DG24.10.2013-----------------------------------------------------------------
//---------------------------------------------------------------------------------------------------
//-- The second run is useful to refine the computation of very heavy nuclei. In this way the beta- decays
//-- of nuclei with lower Z into nuclei with higher Z are taken into account properly!
//-- The second run is useless for B/C protons and leptons;
//-- since it makes the code much slower so it is DISABLED in the default xml
//-- In order to enable it, put the <DoubleRun> flag after the <NuclearChain> block!
//---------------------------------------------------------------------------------------------------
if (inputStructure->DoubleRun == true) {
if (inputStructure->feedback >1) cout<<endl<<endl<<" ******* STARTING SECOND ITERATION ******* "<<endl<<endl;
//int count_nuc = 0;
for (vector<TParticle*>::iterator i_current_part = particles.begin(); i_current_part != particles.end()-1; ++i_current_part) {
int A = (*i_current_part)->GetA();
int Z = (*i_current_part)->GetZ();
int uid = (*i_current_part)->GetUid();
if (feedback>1){
cout << endl << "--SECOND ITERATION--SECOND ITERATION-----" << endl;
cout << "-----------------------------------------" << endl;
cout << "- Starting with nucleus A = " << A << " Z = " << Z << endl;
cout << "- Starting propagation..." << endl;
cout << "-----------------------------------------" << endl;
cout << "--SECOND ITERATION--SECOND ITERATION-----" << endl;
}
(*i_current_part)->Evolve(particles, alg, spallnet, xsecmodel, true);
}
}
//-- End of second loop over particle vector!-----------------------------------------
//------------------------------------------------------------------------------------
//------------------------------------------------------------------------------------
/**
* Normalization part. If it is DM then just convert units, otherwise find protons and electrons and normalize to observed flux.
*/
//DG17.10.2013
//
// BEFORE normalization DM particles are number densities per energy unit: 1/GeV/kpc^3
// ------
// applying kpc^-3 ---> 1/cm^3/GeV
// applying C/4pi ---> 1/cm^2/s/sr/GeV
// applying 1.e4 ---> 1/m^2/s/sr/GeV
// -----
// AFTER normalization DM particles have DRAGON units for the flux: 1/m^2/s/sr/GeV
normDM = C * pow(kpc,-3.) /4./Pi*1.e4; //C is in cm/s
if (inputStructure->propDM && feedback >0) cout<<"Calculate the DM normalization = "<<normDM<<endl;
TParticle* protons = FindParticle(1001, false) ;
if (protons) norm = protons->FindNormalization(inputStructure->sp_ref_rig_norm, inputStructure->spect_norm);
if (feedback>0) cout<<"Calculate the proton normalization = "<<norm<<endl;
TParticle* electrons = FindParticle( -1000, false);
if (electrons) normel = electrons->FindNormalization(inputStructure->sp_ref_rig_el, inputStructure->spect_norm_el);
if (feedback>0) cout<<"Calculate the electron normalization = "<<normel<<endl;
TParticle* electronsExtra = FindParticle( -1000, false, false, true);
if (electronsExtra)
normextra = electronsExtra->FindNormalization(inputStructure->sp_ref_rig_el_extra, inputStructure->spect_norm_el_extra);
if (feedback>0) cout<<"Calculate the extra-component normalization = "<<electronsExtra<<endl;
if (inputStructure->DontNormalize) {
norm = 1.;
normel = 1.;
normextra = 1.;
}
//cout << "Finding normalization for the extra component" << endl;
//cout << in->sp_ref_rig_el_extra << " <- energy || norm -> " << in->spect_norm_el_extra << endl ;
//DG14.01.2014 --- injected energy rate --- --- --- --- --- --- --- --- ---
//updated 16.01.2014
vector<double> Ek;
vector<double> spectrum_;
vector<double> source_distribution;
Ek.clear();
spectrum_.clear();
source_distribution.clear();
/**
* Print nuclear densities and/or spectra in output file.
* Lighter nuclei are printed first.
*/
if (feedback>0) cout<<endl<<endl;
for (vector<TParticle*>::reverse_iterator ripart = particles.rbegin(); ripart != particles.rend(); ++ripart) {
if ((*ripart)->IsDM()) {
if (output_ptr) (*ripart)->Print(output_ptr, normDM);
if (output_ptr_sp) (*ripart)->PrintSpectrum(output_ptr_sp, normDM);
}
else {
if ((*ripart)->IsExtra()) {
if (output_ptr) (*ripart)->Print(output_ptr, normextra);
if (output_ptr_sp) (*ripart)->PrintSpectrum(output_ptr_sp, normextra);
}
else {
if ( ( (*ripart)->GetUid() == -1000 && !(*ripart)->GetIsSec()) || (*ripart)->IsTPP() ) {
// primary electrons and secondary positrons from TPP are normalized to electrons
if (output_ptr) (*ripart)->Print(output_ptr, normel);
if (output_ptr_sp) (*ripart)->PrintSpectrum(output_ptr_sp, normel);
}
else {
if (output_ptr) (*ripart)->Print(output_ptr, norm);
if (output_ptr_sp) (*ripart)->PrintSpectrum(output_ptr_sp, norm);
}
}
}
}
/* ASCII output */
vector<double> e_GeV = gal->GetCoordinates()->GetEk();
char ascii_filename[1000];
sprintf(ascii_filename,"output/%s.txt",inputStructure->filename.c_str());
cout<<"Writing ASCII output file: "<<ascii_filename<<endl;
ofstream outfile(ascii_filename, ios::out);
outfile << "Energy [GeV] ";
for (vector<TParticle*>::reverse_iterator current_part = particles.rbegin(); current_part != particles.rend(); ++current_part) {
if ( (*current_part)->IsDM() && (*current_part)->GetUid() == -1000 )
outfile << "DM_e- " ;
if ( (*current_part)->IsDM() && (*current_part)->GetUid() == 1000 )
outfile << "DM_e+ " ;
if ( (*current_part)->IsDM() && (*current_part)->GetUid() == -999 )
outfile << "DM_pbar " ;
if ( !((*current_part)->IsDM()) && (*current_part)->GetUid() == -1000 && !(*current_part)->GetIsSec() && !(*current_part)->IsExtra() )
outfile << "Pri_e- " ;
if ( !((*current_part)->IsDM()) && (*current_part)->GetUid() == -1000 && (*current_part)->GetIsSec() && !(*current_part)->IsExtra() )
outfile << "Sec_e- " ;
if ( !((*current_part)->IsDM()) && (*current_part)->GetUid() == 1000 && (*current_part)->GetIsSec() && !(*current_part)->IsExtra() )
outfile << "Sec_e+ " ;
if ( !((*current_part)->IsDM()) && (*current_part)->GetUid() == -1000 && !(*current_part)->GetIsSec() && (*current_part)->IsExtra() )
outfile << "Extra_e+ " ;
if ( !((*current_part)->IsDM()) && (*current_part)->GetUid() == -999 && !(*current_part)->GetIsSec() && !(*current_part)->IsExtra() )
outfile << "Sec_pbar " ;
if ( !((*current_part)->IsDM()) && (*current_part)->GetUid() == -999 && (*current_part)->GetIsSec() && !(*current_part)->IsExtra() )
outfile << "Ter_pbar " ;
if ( !((*current_part)->IsDM()) && (*current_part)->GetUid() == 1001 && !(*current_part)->GetIsSec() && !(*current_part)->IsExtra() )
outfile << "Pri_p " ;
if ( !((*current_part)->IsDM()) && (*current_part)->GetUid() == 1001 && (*current_part)->GetIsSec() && !(*current_part)->IsExtra() )
outfile << "Sec_p " ;
if ( (*current_part)->GetUid() > 1001)
outfile << "NUC_" << (*current_part)->GetUid() <<" ";
}
outfile << endl;
for (int ie=0; ie<e_GeV.size(); ie++) {
//
outfile << scientific << setprecision(6) << e_GeV[ie] << " ";
//
for (vector<TParticle*>::reverse_iterator current_part = particles.rbegin(); current_part != particles.rend(); ++current_part) {
//
double flux = (*current_part)->GetFluxAtSunPosition(ie);
//
if ((*current_part)->IsDM())
flux *= normDM;
else {
if ((*current_part)->IsExtra())
flux *= normextra;
else {
if ( ( (*current_part)->GetUid() == -1000 && !(*current_part)->GetIsSec()) || (*current_part)->IsTPP() )
flux *= normel;
else
flux *= norm;
}
}
outfile << flux << " ";
}
outfile << endl;
}
outfile.close();
delete spallnet;
spallnet = NULL;
while (xsecmodel.size()) {
delete xsecmodel.back();
xsecmodel.pop_back();
}
return ;
}
void DRAGON::Print() {
double Rmax = inputStructure->Rmax;
unsigned int cr_irsun;
if (inputStructure->gridtype == "2D")
cr_irsun = (unsigned int) (inputStructure->robs/Rmax*(double)(inputStructure->numr-1)); /**< Radial Sun position. */
else
cr_irsun = (unsigned int) ((inputStructure->robs+Rmax)/(2.0*Rmax)*(double)(inputStructure->numx-1)); /**< Radial Sun position. */
unsigned int cr_ixsun;
unsigned int cr_iysun;
if (inputStructure->gridtype == "3D") { //DG28.11.2013 added ixsun and iyzun in the 3D case
cr_ixsun = (unsigned int) ((inputStructure->xobs+Rmax)/(2.0*Rmax)*(double)(inputStructure->numx-1));
cr_iysun = (unsigned int) ((inputStructure->yobs+Rmax)/(2.0*Rmax)*(double)(inputStructure->numy-1));
}
unsigned int cr_izsun = (unsigned int) ((inputStructure->zobs+inputStructure->zmax)/(2.0*inputStructure->zmax)*(double)(inputStructure->numz-1)), /**< Vertical Sun position. */
cr_gas_model = (unsigned int)inputStructure->gas_model,
cr_SNR_model = (unsigned int)inputStructure->SNR_model;
double cr_rmin = inputStructure->Rmin,
cr_rmax = Rmax,
cr_zmin = -inputStructure->zmax,
cr_zmax = inputStructure->zmax,
cr_rB = rB,
cr_zt = inputStructure->zt,
cr_zr = zr,
cr_Bh = Bh,
cr_D0 = inputStructure->D0*kpc*kpc/Myr,
cr_D_ref_rig = inputStructure->D_ref_rig,
cr_ind_diff = inputStructure->delta,
cr_He_abundance = He_abundance,
cr_sp_ref_rig = inputStructure->sp_ref_rig,
cr_sp_ref_rig_norm = inputStructure->sp_ref_rig_norm,
cr_spect_norm = inputStructure->spect_norm,
cr_Ekmax = inputStructure->Ekmax,
cr_Ekmin = inputStructure->Ekmin,
cr_Ekfac = inputStructure->Ekfact,
cr_u = u,
//cr_tol = tolerance,
//cr_alpha = alpha,
cr_p = p,
cr_vA = inputStructure->vAlfven*kpc/Myr/km,
cr_v0 = inputStructure->v0*kpc/Myr/km,
cr_dvdz = inputStructure->dvdz*kpc/Myr/km,
cr_robs = inputStructure->robs,
cr_zobs = inputStructure->zobs;
double cr_xmin, cr_xmax, cr_ymin, cr_ymax, cr_xobs, cr_yobs; //DG28.11.2013
if (inputStructure->gridtype == "3D") {
cr_xmin = -inputStructure->Rmax;
cr_xmax = inputStructure->Rmax;
cr_ymin = -inputStructure->Rmax;
cr_ymax = inputStructure->Rmax;
cr_xobs = inputStructure->xobs;
cr_yobs = inputStructure->yobs;
}
double crmx = inputStructure->mx;
double crtaudec = inputStructure->taudec;
double crsigmav = inputStructure->sigmav;
int crdmmode = inputStructure->dmmode;
int crdmprof = inputStructure->dmprof;
const long naxis = (inputStructure->gridtype == "2D") ? 3 : 4;
int dimE = int(log(inputStructure->Ekmax/inputStructure->Ekmin)/log(inputStructure->Ekfact) + 1.9);
long size_axes[naxis];
size_axes[0] =dimE;
if (inputStructure->gridtype == "2D") {
size_axes[1] = inputStructure->numr;
size_axes[2] = inputStructure->numz;
}
else {
size_axes[1] = inputStructure->numx;
size_axes[2] = inputStructure->numy;
size_axes[3] = inputStructure->numz;
}
long nelements = 1;
for (int i = 0; i < naxis; ++i) nelements *= size_axes[i];
long fpixel = 1;
int bitpix = FLOAT_IMG;
/**
* Create the first HDU, which only contains header data.
*/
if (output_ptr) {
if (fits_create_img(output_ptr, bitpix, naxis, size_axes, &status))
fits_report_error(stderr, status);
//
if (fits_write_key(output_ptr, TDOUBLE, (char*) "rmin", &cr_rmin, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "rmax", &cr_rmax, NULL, &status))
fits_report_error(stderr, status);
if (inputStructure->gridtype == "3D") {//DG28.11.2013
if (fits_write_key(output_ptr, TDOUBLE, (char*) "xmin", &cr_xmin, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "xmax", &cr_xmax, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "ymin", &cr_ymin, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "ymax", &cr_ymax, NULL, &status))
fits_report_error(stderr, status);
}
if (fits_write_key(output_ptr, TDOUBLE, (char*) "zmin", &cr_zmin, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "zmax", &cr_zmax, NULL, &status))
fits_report_error(stderr, status);
//
if (fits_write_key(output_ptr, TDOUBLE, (char*) "robs", &cr_robs, NULL, &status))
fits_report_error(stderr, status);
if (inputStructure->gridtype == "3D") {//DG28.11.2013
if (fits_write_key(output_ptr, TDOUBLE, (char*) "xobs", &cr_xobs, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "yobs", &cr_yobs, NULL, &status))
fits_report_error(stderr, status);
}
if (fits_write_key(output_ptr, TDOUBLE, (char*) "zobs", &cr_zobs, NULL, &status))
fits_report_error(stderr, status);
//
if (fits_write_key(output_ptr, TUINT, (char*) "irsun", &cr_irsun, NULL, &status))
fits_report_error(stderr, status);
if (inputStructure->gridtype == "3D") {//DG28.11.2013
if (fits_write_key(output_ptr, TINT, (char*) "ixsun", &cr_ixsun, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TINT, (char*) "iysun", &cr_iysun, NULL, &status))
fits_report_error(stderr, status);
}
if (fits_write_key(output_ptr, TUINT, (char*) "izsun", &cr_izsun, NULL, &status))
fits_report_error(stderr, status);
//
if (fits_write_key(output_ptr, TDOUBLE, (char*) "u", &cr_u, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "rB", &cr_rB, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "zt", &cr_zt, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "zr", &cr_zr, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "Bh", &cr_Bh, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "D0", &cr_D0, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "Drefrig", &cr_D_ref_rig, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "ind_diff", &cr_ind_diff, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "He_ab", &cr_He_abundance, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "sprefrig", &cr_sp_ref_rig, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "sprignor", &cr_sp_ref_rig_norm, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "specnorm", &cr_spect_norm, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "Ekmax", &cr_Ekmax, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "Ekmin", &cr_Ekmin, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "Ekin_fac", &cr_Ekfac, NULL, &status))
fits_report_error(stderr, status);
// if (fits_write_key(output_ptr, TDOUBLE, (char*) "tol", &cr_tol, NULL, &status)) fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TUINT, (char*) "gasmod", &cr_gas_model, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TUINT, (char*) "SNRmod", &cr_SNR_model, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TINT, (char*) "dimE", &dimE, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TINT, (char*) "dimr", &(inputStructure->numr), NULL, &status))
fits_report_error(stderr, status);
if (inputStructure->gridtype == "3D") {//DG28.11.2013
if (fits_write_key(output_ptr, TINT, (char*) "dimx", &(inputStructure->numx), NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TINT, (char*) "dimy", &(inputStructure->numy), NULL, &status))
fits_report_error(stderr, status);
}
if (fits_write_key(output_ptr, TINT, (char*) "dimz", &(inputStructure->numz), NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "vAlfven", &cr_vA, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "v0_conv", &cr_v0, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "dvdz_conv", &cr_dvdz, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "mx", &crmx, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "taudec", &crtaudec, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TDOUBLE, (char*) "sigmav", &crsigmav, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TINT, (char*) "dmmode", &crdmmode, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr, TINT, (char*) "dmprof", &crdmprof, NULL, &status))
fits_report_error(stderr, status);
}
if (output_ptr_sp) {
if (fits_create_img(output_ptr_sp, bitpix, 1, size_axes, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "rmin", &cr_rmin, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "rmax", &cr_rmax, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "zmin", &cr_zmin, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "zmax", &cr_zmax, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "robs", &cr_robs, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "zobs", &cr_zobs, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TUINT, (char*) "irsun", &cr_irsun, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TUINT, (char*) "izsun", &cr_izsun, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "u", &cr_u, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "rB", &cr_rB, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "zt", &cr_zt, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "zr", &cr_zr, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "Bh", &cr_Bh, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "D0", &cr_D0, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "Drefrig", &cr_D_ref_rig, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "ind_diff", &cr_ind_diff, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "He_ab", &cr_He_abundance, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "sprefrig", &cr_sp_ref_rig, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "sprignor", &cr_sp_ref_rig_norm, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "specnorm", &cr_spect_norm, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "Ekmax", &cr_Ekmax, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "Ekmin", &cr_Ekmin, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "Ekin_fac", &cr_Ekfac, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TUINT, (char*) "gasmod", &cr_gas_model, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TUINT, (char*) "SNRmod", &cr_SNR_model, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TINT, (char*) "dimE", &dimE, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TINT, (char*) "dimr", &(inputStructure->numr), NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TINT, (char*) "dimz", &(inputStructure->numz), NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "vAlfven", &cr_vA, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "v0_conv", &cr_v0, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "dvdz_conv", &cr_dvdz, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "mx", &crmx, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "taudec", &crtaudec, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TDOUBLE, (char*) "sigmav", &crsigmav, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TINT, (char*) "dmmode", &crdmmode, NULL, &status))
fits_report_error(stderr, status);
if (fits_write_key(output_ptr_sp, TINT, (char*) "dmprof", &crdmprof, NULL, &status))
fits_report_error(stderr, status);
}
if (output_ptr) {
float* array = new float[nelements]();
if (fits_write_img(output_ptr, TFLOAT, fpixel, nelements, array, &status))
fits_report_error(stderr, status);
delete [] array;
}
if (output_ptr_sp) {
float* array = new float[size_axes[0]]();
if (fits_write_img(output_ptr_sp, TFLOAT, fpixel, size_axes[0], array, &status))
fits_report_error(stderr, status);
delete [] array;
}
}