README_conversion_IDs_list.txt

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                                             ( c o n v e r t _ i d s . p y )
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This list reprecents all accepted input and output ID types for convert_ids.py.
When using convert_ids.py, specify the "-s" option, followed by the ID type on this
list which you wish to convert to.  Input IDs do not need to need to be specified.

(e.g.)

~$ python3 convert_ids.py -i input_ids.txt -s ENSG -o output_ids.txt

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Here is the full list of IDs that are accepted by convert_ids.py:

AFFY_HG_FOCUS
AFFY_HG_U133A_2
FFY_HG_U133B
AFFY_HG_U133_PLUS_2
FFY_HG_U95A
AFFY_HG_U95AV2
AFFY_HG_U95B
AFFY_HG_U95C
AFFY_HG_U95D
AFFY_HG_U95E
AFFY_HTA_2_0
AFFY_HUEX_1_0_ST_V2
AFFY_HUGENEFL
AFFY_HUGENE_1_0_ST_V1
AFFY_HUGENE_2_0_ST_V1
AFFY_HUGENE_2_1_ST_V1
AFFY_PRIMEVIEW
AFFY_U133_X3P
AGILENT_CGH_44B
AGILENT_GPL26966
AGILENT_GPL6848
AGILENT_SUREPRINT_G3_GE_8X60K
AGILENT_SUREPRINT_G3_GE_8X60K_V2
AGILENT_WHOLEGENOME
AGILENT_WHOLEGENOME_4X44K_V1
AGILENT_WHOLEGENOME_4X44K_V2
ARRAYEXPRESS
BIOGRID
CCDS
CCDS_ACC
CHEMBL
CODELINK_CODELINK
DBASS3
DBASS3_ACC
DBASS5
DBASS5_ACC
EMBL
ENSG
ENSP
ENST
ENS_HS_TRANSCRIPT
ENS_HS_TRANSLATION
ENS_LRG_GENE
ENS_LRG_TRANSCRIPT
ENTREZGENE
ENTREZGENE_ACC
ENTREZGENE_TRANS_NAME
GO
GOSLIM_GOA
HGNC
HGNC_ACC
HGNC_TRANS_NAME
HPA
HPA_ACC
ILLUMINA_HUMANHT_12_V3
ILLUMINA_HUMANHT_12_V4
ILLUMINA_HUMANREF_8_V3
ILLUMINA_HUMANWG_6_V1
ILLUMINA_HUMANWG_6_V2
ILLUMINA_HUMANWG_6_V3
MEROPS
MIM_GENE
MIM_GENE_ACC
MIM_MORBID
MIM_MORBID_ACC
MIRBASE
MIRBASE_ACC
MIRBASE_TRANS_NAME
PDB
PHALANX_ONEARRAY
PROTEIN_ID
PROTEIN_ID_ACC
REACTOME
REACTOME_GENE
REACTOME_TRANSCRIPT
REFSEQ_MRNA
REFSEQ_MRNA_ACC
REFSEQ_MRNA_PREDICTED
REFSEQ_MRNA_PREDICTED_ACC
REFSEQ_NCRNA
REFSEQ_NCRNA_ACC
REFSEQ_NCRNA_PREDICTED
REFSEQ_NCRNA_PREDICTED_ACC
REFSEQ_PEPTIDE
REFSEQ_PEPTIDE_ACC
REFSEQ_PEPTIDE_PREDICTED
REFSEQ_PEPTIDE_PREDICTED_ACC
RFAM
RFAM_ACC
RFAM_TRANS_NAME
RNACENTRAL
UCSC
UNIPARC
UNIPROTSPTREMBL
UNIPROTSPTREMBL_ACC
UNIPROTSWISSPROT
UNIPROTSWISSPROT_ACC
UNIPROT_GN
UNIPROT_GN_ACC
UNIPROT_ISOFORM
WIKIGENE
WIKIGENE_ACC