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Remove (py)bedtools dependency #16

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tjakobi opened this issue Jun 18, 2017 · 0 comments
Open

Remove (py)bedtools dependency #16

tjakobi opened this issue Jun 18, 2017 · 0 comments
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enhancement
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Version 1.2.0.0

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tjakobi commented Jun 18, 2017

Benchmarks shows that the IO-heavy work flow of bedtools has a severe impact of the performance. It would be reasonable to instead use Brandon's replacement functions.
@tjakobi tjakobi self-assigned this Jun 18, 2017
@tjakobi tjakobi added this to the Version 0.3.0 milestone Jun 30, 2017
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