-
Notifications
You must be signed in to change notification settings - Fork 3
/
analysis.conf
32 lines (25 loc) · 1.05 KB
/
analysis.conf
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
# Configuration of McmcDate analysis.
################################################################################
# Mandatory definitions.
# Analysis name (base file name of results).
analysis_name="mtCDNApri"
# File name of rooted tree in Newick format.
rooted_tree="data/pb_rooted_mitCDNApri.tree"
# File name of trees estimated by a Bayesian method such as Phylobayes. Contains
# a list of Newick trees.
trees="data/unr_lg_g5_ncat1.treelist"
################################################################################
# Optional definitions.
# Calibrations. If the file ends with "csv", assume the calibrations are
# provided in CSV format. Otherwise, assume the calibrations are provided on a
# Newick tree (McmcTree specification; only L, U, and B are supported).
calibrations="data/mtCDNApri_MD.trees"
# Constraints in CSV format.
#constraints="step3-strassert-136taxa-constraints-direct-stiller.csv"
# # Braces in JSON format.
#
# braces="braces.json"
# # Finally, a suffix can be provided to distinguish between results
# # directories.
#
# suffix="test"