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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(ASVenn_fun)
export(VENNFUN)
export(aggregate_fun)
export(aggregate_top_taxa)
export(assign_taxo_fun)
export(bars_fun)
export(check_tax_fun)
export(core_soft_fun)
export(csv2phyloseq_fun)
export(dada2_fun)
export(decontam_fun)
export(deseq2_fun)
export(diversity_alpha_fun)
export(diversity_beta_light)
export(export_to_stamp_fun)
export(fill_tax_fun)
export(generate_phyloseq_fun)
export(generate_tree_fun)
export(heatmap_fun)
export(idTaxa_assign)
export(idtaxa_assign_fasta_fun)
export(idtaxa_traindb)
export(list_venn_fun)
export(metacoder_fun)
export(metagenomeseq_fun)
export(pairwise.adonis)
export(phy2cyto_fun)
export(phy2tsv_fun)
export(plsda_fun)
export(prune_db_fun)
export(rarefaction)
export(split_table_fun)
export(subset_fastx)
export(taxid_fun)
export(update_metadata_fun)
import(Biostrings)
import(DECIPHER)
import(ShortRead)
import(VennDiagram)
import(dada2)
import(decontam)
import(digest)
import(doParallel)
import(foreach)
import(futile.logger)
import(ggplot2)
import(metagenomeSeq)
import(mixOmics)
import(phyloseq)
import(psadd)
import(reshape2)
import(scales)
import(vegan)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,fData)
importFrom(BiocGenerics,estimateSizeFactors)
importFrom(Biostrings,DNAStringSet)
importFrom(DECIPHER,AlignSeqs)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,results)
importFrom(DESeq2,resultsNames)
importFrom(cluster,daisy)
importFrom(dplyr,`%>%`)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,group_by)
importFrom(dplyr,group_map)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(ggpubr,ggtexttable)
importFrom(ggpubr,text_grob)
importFrom(ggpubr,ttheme)
importFrom(glue,glue)
importFrom(grid,grid.draw)
importFrom(gridExtra,grid.arrange)
importFrom(gridExtra,marrangeGrob)
importFrom(gtools,mixedsort)
importFrom(htmlwidgets,saveWidget)
importFrom(metacoder,calc_n_samples)
importFrom(metacoder,calc_obs_props)
importFrom(metacoder,calc_taxon_abund)
importFrom(metacoder,compare_groups)
importFrom(metacoder,diverging_palette)
importFrom(metacoder,filter_obs)
importFrom(metacoder,heat_tree)
importFrom(metacoder,parse_phyloseq)
importFrom(metacoder,taxon_names)
importFrom(metacoder,zero_low_counts)
importFrom(microbiome,aggregate_taxa)
importFrom(microbiome,core_members)
importFrom(microbiome,top_taxa)
importFrom(microbiome,transform)
importFrom(nlme,lme)
importFrom(phangorn,NJ)
importFrom(phangorn,dist.ml)
importFrom(phangorn,phyDat)
importFrom(phangorn,pml)
importFrom(plotly,config)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(plotly,subplot)
importFrom(ranacapa,ggrare)
importFrom(reshape2,melt)
importFrom(stats,p.adjust)
importFrom(stringr,str_remove)
importFrom(stringr,str_replace)
importFrom(tibble,rownames_to_column)
importFrom(utils,combn)
importFrom(vegan,adonis2)
importFrom(vegan,vegdist)
importFrom(venn,venn)