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DESCRIPTION
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DESCRIPTION
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Package: SplicingFactory
Type: Package
Title: Splicing Diversity Analysis for Transcriptome Data
biocViews: Transcriptomics, RNASeq, DifferentialSplicing, AlternativeSplicing, TranscriptomeVariant
Version: 1.3.1
Authors@R: c(
person("Peter A.", "Szikora", role = c("aut"), email = "[email protected]"),
person("Tamas", "Por", role = c("aut"), email = "[email protected]"),
person("Endre", "Sebestyen", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0001-5470-2161")))
Description: The SplicingFactory R package uses transcript-level expression
values to analyze splicing diversity based on various statistical measures,
like Shannon entropy or the Gini index. These measures can quantify
transcript isoform diversity within samples or between conditions.
Additionally, the package analyzes the isoform diversity data, looking for
significant changes between conditions.
RoxygenNote: 7.1.1
Imports: SummarizedExperiment, methods, stats
Suggests:
testthat,
knitr,
rmarkdown,
ggplot2,
tidyr
URL: https://github.com/esebesty/SplicingFactory
BugReports: https://github.com/esebesty/SplicingFactory/issues
Depends: R (>= 4.1)
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr