Releasing CHROMEISTER 1.0

In this release we celebrate CHROMEISTER 1.0 as well as its addition to bioconda (thanks to @bernt-matthias)!

Additions:

1. Added GPL license to include it into conda

Fixes:

1. Changed status of exit code in help command
2. Removed package dplyr by replacing with base functions

Improved precision on signal processing

This update brings higher precision and the possiblity to extract the alignments from CHROMEISTER and GECKO.

Fixes:

1. Precision in the output dotplot matrix improved significantly.

Additions:

1. Now you can extract alignments within the guide_fastas script of the GECKO in-memory-guided branch

CHROMEISTER with extended funcionality [FIX]

This third release includes fixes for (1) grid drawing and (2) index generation.

Fixes:

• Grid eclipsing dotplot when too many sequences in a multifasta. Now it can be disabled.
• Index not picking up score value due to warnings from library.

Features of the extended functionality:

• Fine-grained computation with GECKO
• Automatic grid drawing on the dotplot and separation by sequences (e.g. chromosomes)
• CSV output containing coordinates of each sequence, name and identification in the dotplot

CHROMEISTER with extended funcionality

The second release includes additional features:

• Fine-grained computation with GECKO
• Automatic grid drawing on the dotplot and separation by sequences (e.g. chromosomes)
• CSV output containing coordinates of each sequence, name and identification in the dotplot

First CHROMEISTER release

This is the first CHROMEISTER release which includes complete functionality, namely:

• comparing genomes
• automatic plot
• automatic scoring
• all vs all comparison scripts, for one and two folders
• automatic index creation to summarize comparisons
• rudimentary parallelism supported