Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

add nf-prov #39

Open
kubranarci opened this issue May 13, 2024 · 1 comment
Open

add nf-prov #39

kubranarci opened this issue May 13, 2024 · 1 comment
Assignees

Comments

@kubranarci
Copy link
Member

kubranarci commented May 13, 2024

Is your feature request related to a problem? Please describe

add nf-prov plugin

@drewjbeh

Describe the solution you'd like

  1. Add this below the profiles
    // Nextflow plugins
    plugins {
    id '[email protected]' // Provenance reports for pipeline runs
    }
  2. Add this below the dag block, above manifest
    prov {
    enabled = true
    formats {
    bco {
    file = "${params.outdir}/pipeline_info/manifest_${trace_timestamp}.bco.json"
    }
    }
    }

Describe alternatives you've considered

No response

Additional context

No response

@drewjbeh drewjbeh self-assigned this May 13, 2024
@kubranarci
Copy link
Member Author

note that

Plugin [email protected] requires Nextflow version >=23.04.0

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

When branches are created from issues, their pull requests are automatically linked.

2 participants