Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add nextflow pipeline #7

Open
quentinblampey opened this issue Dec 1, 2023 · 2 comments
Open

Add nextflow pipeline #7

quentinblampey opened this issue Dec 1, 2023 · 2 comments
Labels
enhancement New feature or request help wanted Extra attention is needed

Comments

@quentinblampey
Copy link
Collaborator

quentinblampey commented Dec 1, 2023

The snakemake pipeline should be translated to nextflow to reach more users. Don't hesitate to comment this issue to show your interest, else we keep it as a low priority

EDIT: I'm not very familiar to Nextflow, so I'm open to pull requests :)

@quentinblampey quentinblampey added the enhancement New feature or request label Dec 1, 2023
@quentinblampey quentinblampey added the help wanted Extra attention is needed label Jan 11, 2024
@jeffquinn-msk
Copy link

We wrote a nextflow pipeline for running baysor on 10X Xenium in case its helpful: https://github.com/tansey-lab/nuc2seg/blob/main/nextflow/workflows/nf-core/baysor/main.nf

@quentinblampey
Copy link
Collaborator Author

Thanks @jeffquinn-msk, I'll have a look!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request help wanted Extra attention is needed
Projects
None yet
Development

No branches or pull requests

2 participants