Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Not working #1

Open
pulichandramoulireddy opened this issue Feb 25, 2019 · 1 comment
Open

Not working #1

pulichandramoulireddy opened this issue Feb 25, 2019 · 1 comment

Comments

@pulichandramoulireddy
Copy link

Hi,
This is a nice tool for contamination removal before submission to NCBI. However I am unable to run it successfully and following errors are displayed. Can you help with this error. Thank you.
python3 ./remower.py --genomefile ../../KB_001.fa -c ../../contam_db/contam_in_euks > ../../test_out [12:10PM]
Traceback (most recent call last):
File "./remower.py", line 67, in
sys.exit(main(sys.argv[1:]))
File "./remower.py", line 54, in main
f = rV.runVecSecPipe(args.genomefile, args.dbvec)
File "/usr/local/lib/python3.6/dist-packages/remoVecSec-0.0.2-py3.6.egg/remoVecSec/removeVec.py", line 31, in runVecSecPipe
TypeError: must be str, not NoneType
@antonkulaga
Copy link

Same for me :(

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@antonkulaga @pulichandramoulireddy