datasets/name_server/src/recorder_name_matching_asyncronious.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 140,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "%matplotlib inline\n",
    "import numpy as np\n",
    "import pandas as pd\n",
    "import matplotlib.pyplot as plt"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 141,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "plt.style.use('seaborn-notebook')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 142,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import sys\n",
    "# ADAPT FILE PATH TO GET FUNCTIONALITIES\n",
    "sys.path.append(\"../../../../inbo_python-utilities/gbif/gbif_name_match\")\n",
    "sys.path.append(\"../../../../inbo_python-utilities/gbif/verify_synonyms/\")\n",
    "from gbif_species_name_match import (extract_species_information, \n",
    "                                     extract_gbif_species_names_info, \n",
    "                                     extract_gbif_accepted_key)\n",
    "from verify_synonyms import verify_synonym"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 143,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "import asyncio\n",
    "import aiohttp\n",
    "import requests"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# 1. Recorder unique scientific names derived from the nameserver"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Summary"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "In this section, the output of recorder unique names `recorder_sql_unique_names_output.csv` is matched with GBIF and the resulting matched file (with acceptedKeys for the derived SYNONYMS) is saved in the file `recorder_sql_unique_names_matched.csv`"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Data preparation"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "I extracted all unique species names from recorder (NBN-data) to make an overview of the species (for all surveys), using the query `recorder_sql_unique_names.sql`. After matching with GBIF, we can make a mapping in between 'recommended names' as defined by recorder and the accepted_keys from GBIF. If we manage to make this mapping, we can later on make an easy selection in both directions GBIF <-> Recorder."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "First of all, extract the Recorder unique species names, by querying the NBN-database. for which the Query is stored in `SQL_unique_names.sql`:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 144,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_names = pd.read_csv(\"../data/raw/recorder_sql_unique_names_output.csv\", delimiter='\\t', dtype=object)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 145,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>RECOMMENDED_TAXON_VERSION_KEY</th>\n",
       "      <th>scientificName</th>\n",
       "      <th>TAXON_GROUP_NAME</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>NHMSYS0000456996</td>\n",
       "      <td>Caylusea</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>NHMSYS0000900079</td>\n",
       "      <td>Listrognathus mactator</td>\n",
       "      <td>insect - vliesvleugelige (Hymenoptera)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>NBNSYS0100004462</td>\n",
       "      <td>Paratanytarsus dissimilis</td>\n",
       "      <td>insect - vlieg &amp; mug (Diptera)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>NHMSYS0000603228</td>\n",
       "      <td>Gymnodinium colymbeticum</td>\n",
       "      <td>wier</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>NHMSYS0000875969</td>\n",
       "      <td>Formicinae</td>\n",
       "      <td>insect - vliesvleugelige (Hymenoptera)</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "  RECOMMENDED_TAXON_VERSION_KEY             scientificName  \\\n",
       "0              NHMSYS0000456996                   Caylusea   \n",
       "1              NHMSYS0000900079     Listrognathus mactator   \n",
       "2              NBNSYS0100004462  Paratanytarsus dissimilis   \n",
       "3              NHMSYS0000603228   Gymnodinium colymbeticum   \n",
       "4              NHMSYS0000875969                 Formicinae   \n",
       "\n",
       "                         TAXON_GROUP_NAME  \n",
       "0                              bloemplant  \n",
       "1  insect - vliesvleugelige (Hymenoptera)  \n",
       "2          insect - vlieg & mug (Diptera)  \n",
       "3                                    wier  \n",
       "4  insect - vliesvleugelige (Hymenoptera)  "
      ]
     },
     "execution_count": 145,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_names.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 146,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "144135"
      ]
     },
     "execution_count": 146,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(recorder_names)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 147,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>RECOMMENDED_TAXON_VERSION_KEY</th>\n",
       "      <th>scientificName</th>\n",
       "      <th>TAXON_GROUP_NAME</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>6467</th>\n",
       "      <td>NHMSYS0001697203</td>\n",
       "      <td>Prokaryota</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10559</th>\n",
       "      <td>NHMSYS0000841310</td>\n",
       "      <td>Arthropoda</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>37772</th>\n",
       "      <td>INBSYS0000012542</td>\n",
       "      <td>Procyon lotor</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>38067</th>\n",
       "      <td>NHMSYS0000841034</td>\n",
       "      <td>Lepidoptera</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>42688</th>\n",
       "      <td>NBNSYS0000160353</td>\n",
       "      <td>Lycopodiopsida</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>65550</th>\n",
       "      <td>NHMSYS0000842161</td>\n",
       "      <td>Protista</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>70145</th>\n",
       "      <td>NBNSYS0000172125</td>\n",
       "      <td>Bryophyta</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>79432</th>\n",
       "      <td>NHMSYS0000841378</td>\n",
       "      <td>Pisces</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>92240</th>\n",
       "      <td>NHMSYS0000841351</td>\n",
       "      <td>Insecta</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>101203</th>\n",
       "      <td>NHMSYS0001747258</td>\n",
       "      <td>Lycopodiophyta</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>102896</th>\n",
       "      <td>NHMSYS0000376165</td>\n",
       "      <td>Carnivora</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>103741</th>\n",
       "      <td>NBNSYS0000160581</td>\n",
       "      <td>Order uncertain</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>109623</th>\n",
       "      <td>NBNSYS0000159411</td>\n",
       "      <td>Arachnida</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>112874</th>\n",
       "      <td>NBNSYS0000160231</td>\n",
       "      <td>Insecta</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>124678</th>\n",
       "      <td>INBSYS0000012552</td>\n",
       "      <td>Procyonidae</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>125381</th>\n",
       "      <td>NBNSYS0000174484</td>\n",
       "      <td>Chelicerata</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>139314</th>\n",
       "      <td>NBNSYS0000175876</td>\n",
       "      <td>Incertae sedis</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>139341</th>\n",
       "      <td>INBSYS0000012554</td>\n",
       "      <td>Procyon</td>\n",
       "      <td>niet toegewezen</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "       RECOMMENDED_TAXON_VERSION_KEY   scientificName TAXON_GROUP_NAME\n",
       "6467                NHMSYS0001697203       Prokaryota  niet toegewezen\n",
       "10559               NHMSYS0000841310       Arthropoda  niet toegewezen\n",
       "37772               INBSYS0000012542    Procyon lotor  niet toegewezen\n",
       "38067               NHMSYS0000841034      Lepidoptera  niet toegewezen\n",
       "42688               NBNSYS0000160353   Lycopodiopsida  niet toegewezen\n",
       "65550               NHMSYS0000842161         Protista  niet toegewezen\n",
       "70145               NBNSYS0000172125        Bryophyta  niet toegewezen\n",
       "79432               NHMSYS0000841378           Pisces  niet toegewezen\n",
       "92240               NHMSYS0000841351          Insecta  niet toegewezen\n",
       "101203              NHMSYS0001747258   Lycopodiophyta  niet toegewezen\n",
       "102896              NHMSYS0000376165        Carnivora  niet toegewezen\n",
       "103741              NBNSYS0000160581  Order uncertain  niet toegewezen\n",
       "109623              NBNSYS0000159411        Arachnida  niet toegewezen\n",
       "112874              NBNSYS0000160231          Insecta  niet toegewezen\n",
       "124678              INBSYS0000012552      Procyonidae  niet toegewezen\n",
       "125381              NBNSYS0000174484      Chelicerata  niet toegewezen\n",
       "139314              NBNSYS0000175876   Incertae sedis  niet toegewezen\n",
       "139341              INBSYS0000012554          Procyon  niet toegewezen"
      ]
     },
     "execution_count": 147,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_names[recorder_names['TAXON_GROUP_NAME'] == 'niet toegewezen']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 148,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array(['bloemplant', 'insect - vliesvleugelige (Hymenoptera)',\n",
       "       'insect - vlieg & mug (Diptera)', 'wier', 'diatomee',\n",
       "       'pseudoschorpioen (Pseudoscorpiones)', 'raderdiertje (Rotifera)',\n",
       "       'springstaart (Collembola)', 'insect - kever (Coleoptera)',\n",
       "       'levermos', 'foraminifeer', 'rondworm (Nematoda)', 'zwam',\n",
       "       'lintworm (Cestoda)', 'ringworm', 'amfibie', 'mollusk (Mollusca)',\n",
       "       'insect - nachtvlinder', 'bacterie', 'neteldier (=cnidarian)',\n",
       "       'insect - vlo (Siphonaptera)', 'schaaldier', 'fungoide',\n",
       "       'insect - trips (Thysanoptera)', 'buikhaarworm (Gastrotricha)',\n",
       "       'insect - wants, cicade, bladluis (Hemiptera)', 'mijt (Acari)',\n",
       "       'vogel', 'zuigworm (Trematoda)', 'beenvis (Actinopterygii)',\n",
       "       'insect - dagvlinder', 'miljoenpoot', 'korstmos', 'spin (Araneae)',\n",
       "       'mos', 'kraakbeenvis  (Chondrichthyes)', 'platworm (Turbellaria)',\n",
       "       'varen', 'slurfworm (Kinorhyncha)', 'insect - haft (Ephemeroptera)',\n",
       "       'ribkwal (Ctenophora)', 'landzoogdier', 'slijmzwam', 'conifeer',\n",
       "       'reptiel', 'spons (Porifera)', 'slurfworm (Echiura)',\n",
       "       'insect - libel (Odonata)', 'zeespin (Pycnogonida)',\n",
       "       'mosdiertje (Bryozoa)', 'spuitworm (Sipuncula)',\n",
       "       'insect - kokerjuffer (Trichoptera)',\n",
       "       'insect - gaasvlieg (Neuroptera)', 'stekelhuidige',\n",
       "       'insect - houtluis (Psocoptera)',\n",
       "       'insect - waaiervleugelige (Strepsiptera)', 'kelkworm (Entoprocta)',\n",
       "       'kranswier', 'beerdiertje (Tardigrada)',\n",
       "       'brachiopood (Brachiopoda)', 'baardworm (Pogonophora)',\n",
       "       'snoerworm (Nemertinea)', 'insect - oorworm (Dermaptera)',\n",
       "       'insect - steenvlieg (Plecoptera)', 'manteldiertje (Urochordata)',\n",
       "       'zeezoogdier', 'insect - luis (Phthiraptera)',\n",
       "       'insect - sprinkhaan & krekel (Orthoptera)',\n",
       "       'kaakworm (Gnathostomulida)', 'tweestaart (Diplura)', 'pauropood',\n",
       "       'oerinsect (Protura)', 'loricifeer', 'duizendpoot',\n",
       "       'insect - schorpioenvlieg (Mecoptera)', 'wolfsklauw',\n",
       "       'paardenhaarworm (Nematomorpha)',\n",
       "       'insect - kakkerlak (Dictyoptera)', 'priapulid',\n",
       "       'insect - zilvervis (Thysanura)', 'niet toegewezen', 'hauwmos',\n",
       "       'eikelworm (Hemichordata)', 'hooiwagen (Opiliones)',\n",
       "       'middendiertje (Mesozoa)', 'pijlworm (Chaetognatha)',\n",
       "       'insect - rotsspringer (Archaeognatha)', 'ginkgo',\n",
       "       'parasitaire nematode (Nematoda)', 'dwergpotige (Symphyla)',\n",
       "       'rondbek (Agnatha)', 'biesvaren',\n",
       "       'insect - kameelhalsvlieg (Raphidioptera)',\n",
       "       'hoefijzerworm (Phoronida)', 'insect - wandelende tak (Phasmida)',\n",
       "       'lipklever (Cycliophora)', 'paardenstaart',\n",
       "       'insect - elzenvlieg (Megaloptera)', 'schorpioen',\n",
       "       'oerdiertje (Protozoa)', 'insect - bidsprinkhaan (Mantodea)',\n",
       "       'virus', 'ectoparasitaire platworm', 'ongedetermineerd', nan], dtype=object)"
      ]
     },
     "execution_count": 148,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_names['TAXON_GROUP_NAME'].unique()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "We introduce a mapping in between the INFORMAL GROUP defined by recorder and the kingdom we're dealing with:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 149,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "mapping_kingdom = {'insect - kever (Coleoptera)' : 'Animalia',\n",
    "                   'conifeer' : 'Plantae', \n",
    "                   'beenvis (Actinopterygii)' : 'Animalia', \n",
    "                   'vogel' : 'Animalia', \n",
    "                   'insect - nachtvlinder' : 'Animalia', \n",
    "                   'bloemplant' : 'Plantae',\n",
    "                   'spin (Araneae)' : 'Animalia',\n",
    "                   'insect - vlieg & mug (Diptera)' : 'Animalia', \n",
    "                   'diatomee' : 'Plantae',\n",
    "                   'mollusk (Mollusca)' : 'Animalia',\n",
    "                   'insect - dagvlinder' : 'Animalia', \n",
    "                   'insect - kokerjuffer (Trichoptera)' : 'Animalia',\n",
    "                   'ringworm' : 'Animalia',\n",
    "                   'mos' : 'Plantae',\n",
    "                   'insect - wants, cicade, bladluis (Hemiptera)' : 'Animalia', \n",
    "                   'mijt (Acari)' : 'Animalia', \n",
    "                   'varen' : 'Plantae', \n",
    "                   'schaaldier' : 'Animalia', \n",
    "                   'landzoogdier' : 'Animalia', \n",
    "                   'kranswier' : 'Plantae',\n",
    "                   'insect - sprinkhaan & krekel (Orthoptera)' : 'Animalia', \n",
    "                   'korstmos' : 'Plantae',\n",
    "                   'platworm (Turbellaria)' : 'Animalia',\n",
    "                   'insect - libel (Odonata)' : 'Animalia', \n",
    "                   'wier' : 'Plantae', 'paardenstaart' : 'Plantae',\n",
    "                   'niet toegewezen': None, \n",
    "                   'levermos' : 'Plantae', \n",
    "                   'tweestaart (Diplura)' : 'Animalia',\n",
    "                   'rondbek (Agnatha)' : 'Animalia', \n",
    "                   'duizendpoot' : 'Animalia', \n",
    "                   'wolfsklauw' : 'Plantae', \n",
    "                   'amfibie' : 'Animalia', \n",
    "                   'bacterie' : 'Bacteria',\n",
    "                   'insect - nachtvlinder' : 'Animalia',\n",
    "                   'reptiel' : 'Animalia',\n",
    "                   'insect - vliesvleugelige (Hymenoptera)' : 'Animalia',\n",
    "                   'zwam' : 'Fungi',\n",
    "                   'kraakbeenvis  (Chondrichthyes)' : 'Animalia',\n",
    "                   'rondworm (Nematoda)' : 'Animalia',\n",
    "                   'virus' : 'Viruses',\n",
    "                   'insect - steenvlieg (Plecoptera)' : 'Animalia',\n",
    "                   'zeezoogdier' : 'Animalia',\n",
    "                   'ginkgo' : 'Plantae',\n",
    "                   'parasitaire nematode (Nematoda)' : 'Animalia',\n",
    "                   'zuigworm (Trematoda)' : 'Animalia',\n",
    "                   'biesvaren' : 'Plantae',\n",
    "                   'neteldier (=cnidarian)' : 'Animalia',\n",
    "                   'insect - trips (Thysanoptera)'  : 'Animalia',\n",
    "                   'oerdiertje (Protozoa)' : 'Protozoa',\n",
    "                   'hauwmos' : 'Plantae',\n",
    "                   'lintworm (Cestoda)' : 'Animalia',\n",
    "                   'manteldiertje (Urochordata)' : 'Animalia',\n",
    "                   'stekelhuidige' : 'Animalia',\n",
    "                   'ectoparasitaire platworm' : 'Animalia',\n",
    "                   'ribkwal (Ctenophora)' : 'Animalia',\n",
    "                   'mosdiertje (Bryozoa)' : 'Animalia',\n",
    "                   'pseudoschorpioen (Pseudoscorpiones)' : 'Animalia',\n",
    "                   'raderdiertje (Rotifera)' : 'Animalia',\n",
    "                   'springstaart (Collembola)' : 'Animalia',\n",
    "                   'foraminifeer' : 'Protozoa',\n",
    "                   'insect - vlo (Siphonaptera)' : 'Animalia',\n",
    "                   'fungoide' : 'Fungi', \n",
    "                   'buikhaarworm (Gastrotricha)' : 'Animalia',\n",
    "                   'miljoenpoot' : 'Animalia',\n",
    "                   'slurfworm (Kinorhyncha)' : 'Animalia',\n",
    "                   'insect - haft (Ephemeroptera)' : 'Animalia',\n",
    "                   'slijmzwam' : 'Protozoa',\n",
    "                   'spons (Porifera)' : 'Animalia',\n",
    "                   'slurfworm (Echiura)' : 'Animalia',\n",
    "                   'zeespin (Pycnogonida)' : 'Animalia',\n",
    "                   'spuitworm (Sipuncula)' : 'Animalia',\n",
    "                   'insect - gaasvlieg (Neuroptera)' : 'Animalia',\n",
    "                   'insect - houtluis (Psocoptera)' : 'Animalia',\n",
    "                   'insect - waaiervleugelige (Strepsiptera)' : 'Animalia',\n",
    "                   'kelkworm (Entoprocta)' : 'Animalia',\n",
    "                   'beerdiertje (Tardigrada)' : 'Animalia',\n",
    "                   'brachiopood (Brachiopoda)' : 'Animalia',\n",
    "                   'baardworm (Pogonophora)' : 'Animalia',\n",
    "                   'snoerworm (Nemertinea)' : 'Animalia',\n",
    "                   'insect - oorworm (Dermaptera)' : 'Animalia',\n",
    "                   'insect - luis (Phthiraptera)' : 'Animalia',\n",
    "                   'kaakworm (Gnathostomulida)' : 'Animalia',\n",
    "                   'pauropood' : 'Animalia',\n",
    "                   'oerinsect (Protura)' : 'Animalia',\n",
    "                   'loricifeer' : 'Animalia',\n",
    "                   'insect - schorpioenvlieg (Mecoptera)' : 'Animalia',\n",
    "                   'paardenhaarworm (Nematomorpha)' : 'Animalia',\n",
    "                   'insect - kakkerlak (Dictyoptera)' : 'Animalia',\n",
    "                   'priapulid' : 'Animalia',\n",
    "                   'insect - zilvervis (Thysanura)' : 'Animalia',\n",
    "                   'eikelworm (Hemichordata)' : 'Animalia',\n",
    "                   'hooiwagen (Opiliones)' : 'Animalia',\n",
    "                   'middendiertje (Mesozoa)' : 'Animalia',\n",
    "                   'pijlworm (Chaetognatha)' : 'Animalia',\n",
    "                   'insect - rotsspringer (Archaeognatha)' : 'Animalia',\n",
    "                   'dwergpotige (Symphyla)' : 'Animalia',\n",
    "                   'insect - kameelhalsvlieg (Raphidioptera)' : 'Animalia',\n",
    "                   'hoefijzerworm (Phoronida)' : 'Animalia',\n",
    "                   'insect - wandelende tak (Phasmida)' : 'Animalia',\n",
    "                   'lipklever (Cycliophora)' : 'Animalia',\n",
    "                   'insect - elzenvlieg (Megaloptera)' : 'Animalia',\n",
    "                   'schorpioen' : 'Animalia',\n",
    "                   'insect - bidsprinkhaan (Mantodea)' : 'Animalia',\n",
    "                   'ongedetermineerd' : None,\n",
    "                   np.nan : None\n",
    "                    }"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 150,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_names['kingdom'] = recorder_names['TAXON_GROUP_NAME'].replace(mapping_kingdom)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 151,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array(['Plantae', 'Animalia', 'Protozoa', 'Fungi', 'Bacteria', None,\n",
       "       'Viruses'], dtype=object)"
      ]
     },
     "execution_count": 151,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_names[\"kingdom\"].unique()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 152,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "144135"
      ]
     },
     "execution_count": 152,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(recorder_names)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 153,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>RECOMMENDED_TAXON_VERSION_KEY</th>\n",
       "      <th>scientificName</th>\n",
       "      <th>TAXON_GROUP_NAME</th>\n",
       "      <th>kingdom</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>NHMSYS0000456996</td>\n",
       "      <td>Caylusea</td>\n",
       "      <td>bloemplant</td>\n",
       "      <td>Plantae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>NHMSYS0000900079</td>\n",
       "      <td>Listrognathus mactator</td>\n",
       "      <td>insect - vliesvleugelige (Hymenoptera)</td>\n",
       "      <td>Animalia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>NBNSYS0100004462</td>\n",
       "      <td>Paratanytarsus dissimilis</td>\n",
       "      <td>insect - vlieg &amp; mug (Diptera)</td>\n",
       "      <td>Animalia</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>NHMSYS0000603228</td>\n",
       "      <td>Gymnodinium colymbeticum</td>\n",
       "      <td>wier</td>\n",
       "      <td>Plantae</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>NHMSYS0000875969</td>\n",
       "      <td>Formicinae</td>\n",
       "      <td>insect - vliesvleugelige (Hymenoptera)</td>\n",
       "      <td>Animalia</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "  RECOMMENDED_TAXON_VERSION_KEY             scientificName  \\\n",
       "0              NHMSYS0000456996                   Caylusea   \n",
       "1              NHMSYS0000900079     Listrognathus mactator   \n",
       "2              NBNSYS0100004462  Paratanytarsus dissimilis   \n",
       "3              NHMSYS0000603228   Gymnodinium colymbeticum   \n",
       "4              NHMSYS0000875969                 Formicinae   \n",
       "\n",
       "                         TAXON_GROUP_NAME   kingdom  \n",
       "0                              bloemplant   Plantae  \n",
       "1  insect - vliesvleugelige (Hymenoptera)  Animalia  \n",
       "2          insect - vlieg & mug (Diptera)  Animalia  \n",
       "3                                    wier   Plantae  \n",
       "4  insect - vliesvleugelige (Hymenoptera)  Animalia  "
      ]
     },
     "execution_count": 153,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_names.head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "## Asynchronuous performing the requests"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "As we went to request 144135 different names to the GBIF backbone, a asyncronious requesting should be possible in order to shorten the time to retrieve the results:"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Minimal working example"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "The concept of an asyncronious request of the API as example:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 154,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "class Collector():\n",
    "    def __init__(self):\n",
    "        self.data = {}\n",
    "\n",
    "    async def fetch(self, session, name, kingdom, idx):\n",
    "        parameters = {'verbose': False, 'strict': True, 'name' : name, 'kingdom': kingdom}\n",
    "        async with client.get('http://api.gbif.org/v1/species/match', params=parameters) as resp:\n",
    "            if resp.status != 200:\n",
    "                print(await resp.reason)\n",
    "            else:\n",
    "                #print(await resp.json())\n",
    "                self.data[idx] = await resp.json()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 155,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "testcase = recorder_names.iloc[:100,:]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 156,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "names = testcase[\"scientificName\"].values.tolist()\n",
    "kingdoms = testcase[\"kingdom\"].values.tolist()\n",
    "inbo_idx = testcase[\"RECOMMENDED_TAXON_VERSION_KEY\"].values.tolist()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 157,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "test = Collector()\n",
    "with aiohttp.ClientSession() as client:\n",
    "    asyncio.get_event_loop().run_until_complete(asyncio.gather(\n",
    "            *[test.fetch(client, name, kingdom, idx) for name, kingdom, idx in zip(names, kingdoms, inbo_idx)], \n",
    "            return_exceptions=True))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 158,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "100"
      ]
     },
     "execution_count": 158,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(test.data)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Just a single example:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 159,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "{'canonicalName': 'Bolbitius conocephalus',\n",
       " 'class': 'Agaricomycetes',\n",
       " 'classKey': 186,\n",
       " 'confidence': 100,\n",
       " 'family': 'Bolbitiaceae',\n",
       " 'familyKey': 8440,\n",
       " 'genus': 'Galerella',\n",
       " 'genusKey': 8617918,\n",
       " 'kingdom': 'Fungi',\n",
       " 'kingdomKey': 5,\n",
       " 'matchType': 'EXACT',\n",
       " 'order': 'Agaricales',\n",
       " 'orderKey': 1499,\n",
       " 'phylum': 'Basidiomycota',\n",
       " 'phylumKey': 34,\n",
       " 'rank': 'SPECIES',\n",
       " 'scientificName': 'Bolbitius conocephalus (Bull.) Fr., 1874',\n",
       " 'species': 'Galerella conocephala',\n",
       " 'speciesKey': 5449507,\n",
       " 'status': 'SYNONYM',\n",
       " 'synonym': True,\n",
       " 'usageKey': 2529985}"
      ]
     },
     "execution_count": 159,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "test.data['BMSSYS0000002618']"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Chunked version execution"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Let's try it in chunks of around 100 requests in batches of 50000:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 160,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "144135"
      ]
     },
     "execution_count": 160,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(recorder_names)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 161,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "import time"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "I made the following cells in raw-text to exclude them from running the whole sequence again when just running the notebook, the result of the sequence of runs is loaded as a variable: `recorder_matched` in the next code cell"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {},
   "source": [
    "chunksize = 100\n",
    "batchstart = 0\n",
    "batchsize = 50000\n",
    "\n",
    "data_collect = {}\n",
    "for i in range(batchstart, batchstart + batchsize, chunksize): \n",
    "    current_case = recorder_names.iloc[i:i+chunksize, :] \n",
    "    names = current_case[\"scientificName\"]\n",
    "    kingdoms = current_case[\"kingdom\"]\n",
    "    inbo_idx = current_case[\"RECOMMENDED_TAXON_VERSION_KEY\"]\n",
    "\n",
    "    temp = Collector()\n",
    "    with aiohttp.ClientSession() as client:\n",
    "        asyncio.get_event_loop().run_until_complete(asyncio.wait(\n",
    "                [temp.fetch(client, name, kingdom, idx) for name, kingdom, idx in zip(names, kingdoms, inbo_idx)]))\n",
    "\n",
    "    #    if len(temp.data) < chunksize:\n",
    "    print(len(temp.data))\n",
    "    data_collect.update(temp.data)\n",
    "\n",
    "run_part = pd.DataFrame(data_collect).transpose()\n",
    "run_part.to_csv(\"\".join([\"recorder_\", str(batchstart), \"_till_\", str(batchsize), \".csv\"]))   "
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "chunksize = 100\n",
    "batchstart = 50000\n",
    "batchsize = 50000\n",
    "\n",
    "data_collect = {}\n",
    "for i in range(batchstart, batchstart + batchsize, chunksize): \n",
    "    current_case = recorder_names.iloc[i:i+chunksize, :] \n",
    "    names = current_case[\"scientificName\"]\n",
    "    kingdoms = current_case[\"kingdom\"]\n",
    "    inbo_idx = current_case[\"RECOMMENDED_TAXON_VERSION_KEY\"]\n",
    "\n",
    "    temp = Collector()\n",
    "    with aiohttp.ClientSession() as client:\n",
    "        asyncio.get_event_loop().run_until_complete(asyncio.wait(\n",
    "                [temp.fetch(client, name, kingdom, idx) for name, kingdom, idx in zip(names, kingdoms, inbo_idx)]))\n",
    "\n",
    "    #    if len(temp.data) < chunksize:\n",
    "    print(len(temp.data))\n",
    "    data_collect.update(temp.data)\n",
    "\n",
    "run_part = pd.DataFrame(data_collect).transpose()\n",
    "run_part.to_csv(\"\".join([\"recorder_\", str(batchstart), \"_till_\", str(batchsize), \".csv\"]))   "
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "chunksize = 100\n",
    "batchstart = 100000\n",
    "batchsize = 44136\n",
    "\n",
    "data_collect = {}\n",
    "for i in range(batchstart, batchstart + batchsize, chunksize): \n",
    "    current_case = recorder_names.iloc[i:i+chunksize, :] \n",
    "    names = current_case[\"scientificName\"]\n",
    "    kingdoms = current_case[\"kingdom\"]\n",
    "    inbo_idx = current_case[\"RECOMMENDED_TAXON_VERSION_KEY\"]\n",
    "\n",
    "    temp = Collector()\n",
    "    with aiohttp.ClientSession() as client:\n",
    "        asyncio.get_event_loop().run_until_complete(asyncio.wait(\n",
    "                [temp.fetch(client, name, kingdom, idx) for name, kingdom, idx in zip(names, kingdoms, inbo_idx)]))\n",
    "\n",
    "    #    if len(temp.data) < chunksize:\n",
    "    print(len(temp.data))\n",
    "    data_collect.update(temp.data)\n",
    "\n",
    "run_part = pd.DataFrame(data_collect).transpose()\n",
    "run_part.to_csv(\"\".join([\"recorder_\", str(batchstart), \"_till_\", str(batchsize), \".csv\"]))   "
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {},
   "source": [
    "Combining the three batches:"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "results1 = pd.read_csv(\"recorder_0_till_50000.csv\", dtype=object)\n",
    "results2 = pd.read_csv(\"recorder_50000_till_50000.csv\", dtype=object)\n",
    "results3 = pd.read_csv(\"recorder_100000_till_44136.csv\", dtype=object)"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "result = pd.concat((results1, results2, results3))"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "len(result)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Not missing that much requests anymore, since we're less than 144135 requests"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Retrying the missing requests "
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Some requests just went wrong, let's redo this set of around 100 failures.."
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "compare = pd.merge(recorder_names, result, left_on=\"RECOMMENDED_TAXON_VERSION_KEY\", right_on=\"Unnamed: 0\", how='left')"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "toredo = compare[compare[\"Unnamed: 0\"].isnull()][[\"RECOMMENDED_TAXON_VERSION_KEY\", \"scientificName_x\", \"kingdom_x\"]]"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "toredo.head(10)"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "support_redo = {}\n",
    "for idx, row in toredo.iterrows():\n",
    "    support_redo[row[\"RECOMMENDED_TAXON_VERSION_KEY\"]] = extract_gbif_species_names_info(row[\"scientificName_x\"], row[\"kingdom_x\"])\n",
    "    \n",
    "    "
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "redo_df = pd.DataFrame(support_redo).transpose()"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "redo_df = redo_df.reset_index()\n",
    "redo_df = redo_df.rename(columns={\"index\" : \"Unnamed: 0\"})"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "recorder_matched = pd.concat((redo_df, result))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Reading in the matches names from the last performed matching"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "### getting the acceptedKey when the status is not accepted but SYNONYM"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "recorder_matched[\"acceptedKey\"] = recorder_matched[\"usageKey\"]\n",
    "recorder_matched[\"acceptedScientificName\"] = recorder_matched[\"scientificName\"]"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "for idx, row in recorder_matched.iterrows():\n",
    "    if row[\"synonym\"] == 'True':\n",
    "        if row[\"acceptedKey\"] == row[\"usageKey\"]: \n",
    "            #print(row[\"usageKey\"], row[\"acceptedKey\"]) \n",
    "            base_string = \"http://api.gbif.org/v1/species/\"\n",
    "            request = ''.join((base_string, str(int(row[\"usageKey\"]))))\n",
    "            message = requests.get(_escape_spaces(request)).json()\n",
    "            try:\n",
    "                row[\"acceptedKey\"] = message[\"acceptedKey\"]\n",
    "                row[\"acceptedScientificName\"] = message[\"accepted\"]\n",
    "            except:\n",
    "                print(message)\n",
    "                row[\"acceptedKey\"] = None\n",
    "                row[\"acceptedScientificName\"] = None"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "recorder_matched = recorder_matched.reset_index()\n",
    "recorder_matched = recorder_matched.drop(\"Unnamed: 0\", axis=1)\n",
    "recorder_matched = recorder_matched.set_index(\"Unnamed: 0.1\")"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {},
   "source": [
    "recorder_matched.to_csv(\"../data/interim/recorder_sql_unique_names_matched.csv\", dtype=object)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Checking the matched result"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 162,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched = pd.read_csv(\"../data/interim/recorder_sql_unique_names_matched.csv\", dtype=object)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 163,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched = recorder_matched.rename(columns={\"Unnamed: 0.1\": \"INBO_identifier\"})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 164,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>INBO_identifier</th>\n",
       "      <th>canonicalName</th>\n",
       "      <th>class</th>\n",
       "      <th>classKey</th>\n",
       "      <th>confidence</th>\n",
       "      <th>family</th>\n",
       "      <th>familyKey</th>\n",
       "      <th>genus</th>\n",
       "      <th>genusKey</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>...</th>\n",
       "      <th>phylumKey</th>\n",
       "      <th>rank</th>\n",
       "      <th>scientificName</th>\n",
       "      <th>species</th>\n",
       "      <th>speciesKey</th>\n",
       "      <th>status</th>\n",
       "      <th>synonym</th>\n",
       "      <th>usageKey</th>\n",
       "      <th>acceptedKey</th>\n",
       "      <th>acceptedScientificName</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>INBSYS0000005533</td>\n",
       "      <td>Cotoneaster villosulus</td>\n",
       "      <td>Magnoliopsida</td>\n",
       "      <td>220</td>\n",
       "      <td>100</td>\n",
       "      <td>Rosaceae</td>\n",
       "      <td>5015</td>\n",
       "      <td>Cotoneaster</td>\n",
       "      <td>3025563</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>...</td>\n",
       "      <td>7707728</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>Cotoneaster villosulus (Rehder &amp; E.H. Wilson) ...</td>\n",
       "      <td>Cotoneaster acutifolius</td>\n",
       "      <td>3025770</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>True</td>\n",
       "      <td>3025564</td>\n",
       "      <td>3025565</td>\n",
       "      <td>Cotoneaster acutifolius var. villosulus Rehd. ...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>NBNSYS0000019326</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>100</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>False</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>NBNSYS0000022430</td>\n",
       "      <td>Leuctra hippopus</td>\n",
       "      <td>Insecta</td>\n",
       "      <td>216</td>\n",
       "      <td>100</td>\n",
       "      <td>Leuctridae</td>\n",
       "      <td>2998</td>\n",
       "      <td>Leuctra</td>\n",
       "      <td>2001760</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>...</td>\n",
       "      <td>54</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>Leuctra hippopus Kempny, 1899</td>\n",
       "      <td>Leuctra hippopus</td>\n",
       "      <td>2001976</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>False</td>\n",
       "      <td>2001976</td>\n",
       "      <td>2001976</td>\n",
       "      <td>Leuctra hippopus Kempny, 1899</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>NBNSYS0200001885</td>\n",
       "      <td>Axonopus compressus</td>\n",
       "      <td>Liliopsida</td>\n",
       "      <td>196</td>\n",
       "      <td>100</td>\n",
       "      <td>Poaceae</td>\n",
       "      <td>3073</td>\n",
       "      <td>Mesosetum</td>\n",
       "      <td>4113460</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>...</td>\n",
       "      <td>7707728</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>Axonopus compressus (Sw.) P.Beauv.</td>\n",
       "      <td>Mesosetum compressum</td>\n",
       "      <td>4114391</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>True</td>\n",
       "      <td>2705924</td>\n",
       "      <td>4114391</td>\n",
       "      <td>Mesosetum compressum Swallen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>NHMSYS0001480349</td>\n",
       "      <td>Dasyscyphus relicinus</td>\n",
       "      <td>Leotiomycetes</td>\n",
       "      <td>179</td>\n",
       "      <td>100</td>\n",
       "      <td>Lachnaceae</td>\n",
       "      <td>3295205</td>\n",
       "      <td>Lachnum</td>\n",
       "      <td>2581043</td>\n",
       "      <td>Fungi</td>\n",
       "      <td>...</td>\n",
       "      <td>95</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>Dasyscyphus relicinus (Fr.) Boud.</td>\n",
       "      <td>Lachnum relicinum</td>\n",
       "      <td>3489190</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>True</td>\n",
       "      <td>3281874</td>\n",
       "      <td>3489190</td>\n",
       "      <td>Lachnum relicinum (Fr.) P. Karst., 1871</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5 rows × 26 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "    INBO_identifier           canonicalName          class classKey  \\\n",
       "0  INBSYS0000005533  Cotoneaster villosulus  Magnoliopsida      220   \n",
       "1  NBNSYS0000019326                     NaN            NaN      NaN   \n",
       "2  NBNSYS0000022430        Leuctra hippopus        Insecta      216   \n",
       "3  NBNSYS0200001885     Axonopus compressus     Liliopsida      196   \n",
       "4  NHMSYS0001480349   Dasyscyphus relicinus  Leotiomycetes      179   \n",
       "\n",
       "  confidence      family familyKey        genus genusKey   kingdom  \\\n",
       "0        100    Rosaceae      5015  Cotoneaster  3025563   Plantae   \n",
       "1        100         NaN       NaN          NaN      NaN       NaN   \n",
       "2        100  Leuctridae      2998      Leuctra  2001760  Animalia   \n",
       "3        100     Poaceae      3073    Mesosetum  4113460   Plantae   \n",
       "4        100  Lachnaceae   3295205      Lachnum  2581043     Fungi   \n",
       "\n",
       "                         ...                         phylumKey     rank  \\\n",
       "0                        ...                           7707728  SPECIES   \n",
       "1                        ...                               NaN      NaN   \n",
       "2                        ...                                54  SPECIES   \n",
       "3                        ...                           7707728  SPECIES   \n",
       "4                        ...                                95  SPECIES   \n",
       "\n",
       "                                      scientificName                  species  \\\n",
       "0  Cotoneaster villosulus (Rehder & E.H. Wilson) ...  Cotoneaster acutifolius   \n",
       "1                                                NaN                      NaN   \n",
       "2                      Leuctra hippopus Kempny, 1899         Leuctra hippopus   \n",
       "3                 Axonopus compressus (Sw.) P.Beauv.     Mesosetum compressum   \n",
       "4                  Dasyscyphus relicinus (Fr.) Boud.        Lachnum relicinum   \n",
       "\n",
       "  speciesKey    status synonym usageKey acceptedKey  \\\n",
       "0    3025770   SYNONYM    True  3025564     3025565   \n",
       "1        NaN       NaN   False      NaN         NaN   \n",
       "2    2001976  ACCEPTED   False  2001976     2001976   \n",
       "3    4114391   SYNONYM    True  2705924     4114391   \n",
       "4    3489190   SYNONYM    True  3281874     3489190   \n",
       "\n",
       "                              acceptedScientificName  \n",
       "0  Cotoneaster acutifolius var. villosulus Rehd. ...  \n",
       "1                                                NaN  \n",
       "2                      Leuctra hippopus Kempny, 1899  \n",
       "3                       Mesosetum compressum Swallen  \n",
       "4            Lachnum relicinum (Fr.) P. Karst., 1871  \n",
       "\n",
       "[5 rows x 26 columns]"
      ]
     },
     "execution_count": 164,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_matched.head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Some summary information:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 165,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "Index(['INBO_identifier', 'canonicalName', 'class', 'classKey', 'confidence',\n",
       "       'family', 'familyKey', 'genus', 'genusKey', 'kingdom', 'kingdomKey',\n",
       "       'matchType', 'note', 'order', 'orderKey', 'phylum', 'phylumKey', 'rank',\n",
       "       'scientificName', 'species', 'speciesKey', 'status', 'synonym',\n",
       "       'usageKey', 'acceptedKey', 'acceptedScientificName'],\n",
       "      dtype='object')"
      ]
     },
     "execution_count": 165,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_matched.columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 166,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "144135"
      ]
     },
     "execution_count": 166,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_matched[\"matchType\"].count()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 167,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "<matplotlib.axes._subplots.AxesSubplot at 0x7fda0034c828>"
      ]
     },
     "execution_count": 167,
     "metadata": {},
     "output_type": "execute_result"
    },
    {
     "data": {
      "image/png": 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FADCMYAEADCNYAADDCBYAwDCCBQAwjGABAAwjWAAAwwgWAMAwggUAMIxgAQAMI1gAAMMI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\nAAAAAElFTkSuQmCC\n",
      "text/plain": [
       "<matplotlib.figure.Figure at 0x7fda0034cd68>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "recorder_matched.groupby((\"matchType\")).count()[\"confidence\"].plot(kind=\"barh\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 168,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "<matplotlib.axes._subplots.AxesSubplot at 0x7fda0035e860>"
      ]
     },
     "execution_count": 168,
     "metadata": {},
     "output_type": "execute_result"
    },
    {
     "data": {
      "image/png": "iVBORw0KGgoAAAANSUhEUgAAAiwAAAFSCAYAAADRt4TFAAAABHNCSVQICAgIfAhkiAAAAAlwSFlz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\nSvoAAAAASUVORK5CYII=\n",
      "text/plain": [
       "<matplotlib.figure.Figure at 0x7fda00312ef0>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "recorder_matched.groupby((\"status\")).count()[\"canonicalName\"].plot(kind=\"barh\")"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Other 39000 are NONE..."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "#### Different reasons for failed answer in the note:"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "*Multiple equal matches for...* added by the name"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 169,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "19818"
      ]
     },
     "execution_count": 169,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "sum(recorder_matched[\"note\"].str.contains(\"too little\").dropna())"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "*No match because of too little confidence*"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 170,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "988"
      ]
     },
     "execution_count": 170,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "sum(recorder_matched[\"note\"].str.contains(\"Multiple equal matches\").dropna())"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "*N synonym homonyms* (with N = 2, 3,...) -> When SYNONYM is found"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 171,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "1344"
      ]
     },
     "execution_count": 171,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "sum(recorder_matched[\"note\"].str.contains(\"synonym homonyms\").dropna())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 172,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "Index(['INBO_identifier', 'canonicalName', 'class', 'classKey', 'confidence',\n",
       "       'family', 'familyKey', 'genus', 'genusKey', 'kingdom', 'kingdomKey',\n",
       "       'matchType', 'note', 'order', 'orderKey', 'phylum', 'phylumKey', 'rank',\n",
       "       'scientificName', 'species', 'speciesKey', 'status', 'synonym',\n",
       "       'usageKey', 'acceptedKey', 'acceptedScientificName'],\n",
       "      dtype='object')"
      ]
     },
     "execution_count": 172,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_matched.columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 173,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>INBO_identifier</th>\n",
       "      <th>canonicalName</th>\n",
       "      <th>class</th>\n",
       "      <th>classKey</th>\n",
       "      <th>confidence</th>\n",
       "      <th>family</th>\n",
       "      <th>familyKey</th>\n",
       "      <th>genus</th>\n",
       "      <th>genusKey</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>...</th>\n",
       "      <th>phylumKey</th>\n",
       "      <th>rank</th>\n",
       "      <th>scientificName</th>\n",
       "      <th>species</th>\n",
       "      <th>speciesKey</th>\n",
       "      <th>status</th>\n",
       "      <th>synonym</th>\n",
       "      <th>usageKey</th>\n",
       "      <th>acceptedKey</th>\n",
       "      <th>acceptedScientificName</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>INBSYS0000005533</td>\n",
       "      <td>Cotoneaster villosulus</td>\n",
       "      <td>Magnoliopsida</td>\n",
       "      <td>220</td>\n",
       "      <td>100</td>\n",
       "      <td>Rosaceae</td>\n",
       "      <td>5015</td>\n",
       "      <td>Cotoneaster</td>\n",
       "      <td>3025563</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>...</td>\n",
       "      <td>7707728</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>Cotoneaster villosulus (Rehder &amp; E.H. Wilson) ...</td>\n",
       "      <td>Cotoneaster acutifolius</td>\n",
       "      <td>3025770</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>True</td>\n",
       "      <td>3025564</td>\n",
       "      <td>3025565</td>\n",
       "      <td>Cotoneaster acutifolius var. villosulus Rehd. ...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>NBNSYS0000019326</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>100</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>False</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>NBNSYS0000022430</td>\n",
       "      <td>Leuctra hippopus</td>\n",
       "      <td>Insecta</td>\n",
       "      <td>216</td>\n",
       "      <td>100</td>\n",
       "      <td>Leuctridae</td>\n",
       "      <td>2998</td>\n",
       "      <td>Leuctra</td>\n",
       "      <td>2001760</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>...</td>\n",
       "      <td>54</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>Leuctra hippopus Kempny, 1899</td>\n",
       "      <td>Leuctra hippopus</td>\n",
       "      <td>2001976</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>False</td>\n",
       "      <td>2001976</td>\n",
       "      <td>2001976</td>\n",
       "      <td>Leuctra hippopus Kempny, 1899</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>NBNSYS0200001885</td>\n",
       "      <td>Axonopus compressus</td>\n",
       "      <td>Liliopsida</td>\n",
       "      <td>196</td>\n",
       "      <td>100</td>\n",
       "      <td>Poaceae</td>\n",
       "      <td>3073</td>\n",
       "      <td>Mesosetum</td>\n",
       "      <td>4113460</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>...</td>\n",
       "      <td>7707728</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>Axonopus compressus (Sw.) P.Beauv.</td>\n",
       "      <td>Mesosetum compressum</td>\n",
       "      <td>4114391</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>True</td>\n",
       "      <td>2705924</td>\n",
       "      <td>4114391</td>\n",
       "      <td>Mesosetum compressum Swallen</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>NHMSYS0001480349</td>\n",
       "      <td>Dasyscyphus relicinus</td>\n",
       "      <td>Leotiomycetes</td>\n",
       "      <td>179</td>\n",
       "      <td>100</td>\n",
       "      <td>Lachnaceae</td>\n",
       "      <td>3295205</td>\n",
       "      <td>Lachnum</td>\n",
       "      <td>2581043</td>\n",
       "      <td>Fungi</td>\n",
       "      <td>...</td>\n",
       "      <td>95</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>Dasyscyphus relicinus (Fr.) Boud.</td>\n",
       "      <td>Lachnum relicinum</td>\n",
       "      <td>3489190</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>True</td>\n",
       "      <td>3281874</td>\n",
       "      <td>3489190</td>\n",
       "      <td>Lachnum relicinum (Fr.) P. Karst., 1871</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5 rows × 26 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "    INBO_identifier           canonicalName          class classKey  \\\n",
       "0  INBSYS0000005533  Cotoneaster villosulus  Magnoliopsida      220   \n",
       "1  NBNSYS0000019326                     NaN            NaN      NaN   \n",
       "2  NBNSYS0000022430        Leuctra hippopus        Insecta      216   \n",
       "3  NBNSYS0200001885     Axonopus compressus     Liliopsida      196   \n",
       "4  NHMSYS0001480349   Dasyscyphus relicinus  Leotiomycetes      179   \n",
       "\n",
       "  confidence      family familyKey        genus genusKey   kingdom  \\\n",
       "0        100    Rosaceae      5015  Cotoneaster  3025563   Plantae   \n",
       "1        100         NaN       NaN          NaN      NaN       NaN   \n",
       "2        100  Leuctridae      2998      Leuctra  2001760  Animalia   \n",
       "3        100     Poaceae      3073    Mesosetum  4113460   Plantae   \n",
       "4        100  Lachnaceae   3295205      Lachnum  2581043     Fungi   \n",
       "\n",
       "                         ...                         phylumKey     rank  \\\n",
       "0                        ...                           7707728  SPECIES   \n",
       "1                        ...                               NaN      NaN   \n",
       "2                        ...                                54  SPECIES   \n",
       "3                        ...                           7707728  SPECIES   \n",
       "4                        ...                                95  SPECIES   \n",
       "\n",
       "                                      scientificName                  species  \\\n",
       "0  Cotoneaster villosulus (Rehder & E.H. Wilson) ...  Cotoneaster acutifolius   \n",
       "1                                                NaN                      NaN   \n",
       "2                      Leuctra hippopus Kempny, 1899         Leuctra hippopus   \n",
       "3                 Axonopus compressus (Sw.) P.Beauv.     Mesosetum compressum   \n",
       "4                  Dasyscyphus relicinus (Fr.) Boud.        Lachnum relicinum   \n",
       "\n",
       "  speciesKey    status synonym usageKey acceptedKey  \\\n",
       "0    3025770   SYNONYM    True  3025564     3025565   \n",
       "1        NaN       NaN   False      NaN         NaN   \n",
       "2    2001976  ACCEPTED   False  2001976     2001976   \n",
       "3    4114391   SYNONYM    True  2705924     4114391   \n",
       "4    3489190   SYNONYM    True  3281874     3489190   \n",
       "\n",
       "                              acceptedScientificName  \n",
       "0  Cotoneaster acutifolius var. villosulus Rehd. ...  \n",
       "1                                                NaN  \n",
       "2                      Leuctra hippopus Kempny, 1899  \n",
       "3                       Mesosetum compressum Swallen  \n",
       "4            Lachnum relicinum (Fr.) P. Karst., 1871  \n",
       "\n",
       "[5 rows x 26 columns]"
      ]
     },
     "execution_count": 173,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_matched.head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# 2. Verify the SYNONYM with a list of known verifications"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "The workflow is comparable to the one described on [https://github.com/inbo/invasive-t0-occurrences/issues/52](https://github.com/inbo/invasive-t0-occurrences/issues/52), in order to derive an overview of the verified matching of the nameserver towards the GBIF services"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 174,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched[\"nameMatchValidation\"] = np.nan"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 176,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched.loc[recorder_matched[\"status\"] == \"ACCEPTED\", \"nameMatchValidation\"] = 'ok'\n",
    "recorder_matched.loc[recorder_matched[\"status\"] == \"DOUBTFUL\", \"nameMatchValidation\"] = 'ok: DOUBTFUL'"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Running the verification of the synonyms"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 177,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "Index(['INBO_identifier', 'canonicalName', 'class', 'classKey', 'confidence',\n",
       "       'family', 'familyKey', 'genus', 'genusKey', 'kingdom', 'kingdomKey',\n",
       "       'matchType', 'note', 'order', 'orderKey', 'phylum', 'phylumKey', 'rank',\n",
       "       'scientificName', 'species', 'speciesKey', 'status', 'synonym',\n",
       "       'usageKey', 'acceptedKey', 'acceptedScientificName',\n",
       "       'nameMatchValidation'],\n",
       "      dtype='object')"
      ]
     },
     "execution_count": 177,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_matched.columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 178,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched = recorder_matched.rename(columns={\"status\": \"gbif_status\"})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 179,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched = verify_synonym(recorder_matched, \"temp_out.tsv\", \n",
    "                                  \"https://raw.githubusercontent.com/inbo/alien-species-checklist/master/data/vocabularies/verified-synonyms.tsv\", \n",
    "                                  usagekeycol='usageKey', \n",
    "                                  acceptedkeycol='acceptedKey', \n",
    "                                  taxonomicstatuscol='gbif_status', \n",
    "                                  outputcol='nameMatchValidation')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Number of corrections initiated by the synonym verification:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 180,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "120"
      ]
     },
     "execution_count": 180,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "temp = recorder_matched[(recorder_matched[\"nameMatchValidation\"].notnull()) & \n",
    "                 (recorder_matched[\"nameMatchValidation\"].str.contains(\"ok:\"))\n",
    "                ]\n",
    "len(temp[~temp[\"nameMatchValidation\"].str.contains(\"ok: DOUBTFUL\")])\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "remove redundant columns:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 185,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched = recorder_matched.drop([\"gbifapi_usageKey\", \"gbifapi_acceptedKey\"], axis=1)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# 3. Data product"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "For the final data product, we want to provide the matches we can trust, i.e. the status is `ACCEPTED`, `DOUBTFUL` or a verified `SYNONYM`"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 186,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched_verified = recorder_matched[recorder_matched['nameMatchValidation'].notnull & recorder_matched['nameMatchValidation'].str.contains('^ok', regex=True)]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 187,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "<matplotlib.axes._subplots.AxesSubplot at 0x7fda00286710>"
      ]
     },
     "execution_count": 187,
     "metadata": {},
     "output_type": "execute_result"
    },
    {
     "data": {
      "image/png": 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Y5/y/fb92MZ3zC7cajyvJ44D/AJ7RbG8CvKi37qrrNbqAYUqSNHyjo6NU1QOv+VpyVxNX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\nk0FJkqQWMxmUJElqMZNBSZKkFvv/74N8UFvB8x8AAAAASUVORK5CYII=\n",
      "text/plain": [
       "<matplotlib.figure.Figure at 0x7fd9fff09860>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "recorder_matched_verified.groupby(('nameMatchValidation')).count()['INBO_identifier'].plot(kind=\"barh\", logx=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 189,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched_verified.to_csv('../data/processed/recorder_sql_unique_names_matched_verified.tsv',\n",
    "                                 index=False, sep='\\t', na_rep=\"\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "# 4. THIS NEED TO GO TO OTHER DATA REPO"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "##  Species list to report on defined by Tim/Sander"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**Need to be adjusted from here, as defined in [ISSUE #47](https://github.com/inbo/invasive-t0-occurrences/issues/47):**"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Read species list:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 343,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "invasive_species = pd.read_csv(\"../../species-list/species-list.tsv\", delimiter=\"\\t\", dtype=object)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 344,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "152"
      ]
     },
     "execution_count": 344,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(invasive_species)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 357,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>index</th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>euConcernStatus</th>\n",
       "      <th>gbifapi_usageKey</th>\n",
       "      <th>gbifapi_scientificName</th>\n",
       "      <th>gbifapi_canonicalName</th>\n",
       "      <th>gbifapi_status</th>\n",
       "      <th>gbifapi_rank</th>\n",
       "      <th>gbifapi_matchType</th>\n",
       "      <th>gbifapi_confidence</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>nbnTaxonID</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>0</td>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>3189866</td>\n",
       "      <td>Acer negundo L.</td>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3189866</td>\n",
       "      <td>Acer negundo L.</td>\n",
       "      <td>NBNSYS0000014604</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>1</td>\n",
       "      <td>Alopochen aegyptiaca</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>2498252</td>\n",
       "      <td>Alopochen aegyptiaca (Linnaeus, 1766)</td>\n",
       "      <td>Alopochen aegyptiaca</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2498252</td>\n",
       "      <td>Alopochen aegyptiaca (Linnaeus, 1766)</td>\n",
       "      <td>NHMSYS0001689380</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>2</td>\n",
       "      <td>Alternanthera philoxeroides</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>3084923</td>\n",
       "      <td>Alternanthera philoxeroides (Mart.) Griseb.</td>\n",
       "      <td>Alternanthera philoxeroides</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3084923</td>\n",
       "      <td>Alternanthera philoxeroides (Mart.) Griseb.</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>3</td>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>2340977</td>\n",
       "      <td>Ameiurus melas (Rafinesque, 1820)</td>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2340977</td>\n",
       "      <td>Ameiurus melas (Rafinesque, 1820)</td>\n",
       "      <td>NHMSYS0000544615</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>4</td>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>3170247</td>\n",
       "      <td>Asclepias syriaca L.</td>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>3170247</td>\n",
       "      <td>Asclepias syriaca L.</td>\n",
       "      <td>INBSYS0000005932</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "  index                         name   kingdom      euConcernStatus  \\\n",
       "0     0                 Acer negundo   Plantae  under consideration   \n",
       "1     1         Alopochen aegyptiaca  Animalia  under consideration   \n",
       "2     2  Alternanthera philoxeroides   Plantae  under consideration   \n",
       "3     3               Ameiurus melas  Animalia  under consideration   \n",
       "4     4            Asclepias syriaca   Plantae  under consideration   \n",
       "\n",
       "  gbifapi_usageKey                       gbifapi_scientificName  \\\n",
       "0          3189866                              Acer negundo L.   \n",
       "1          2498252        Alopochen aegyptiaca (Linnaeus, 1766)   \n",
       "2          3084923  Alternanthera philoxeroides (Mart.) Griseb.   \n",
       "3          2340977            Ameiurus melas (Rafinesque, 1820)   \n",
       "4          3170247                         Asclepias syriaca L.   \n",
       "\n",
       "         gbifapi_canonicalName gbifapi_status gbifapi_rank gbifapi_matchType  \\\n",
       "0                 Acer negundo       ACCEPTED      SPECIES             EXACT   \n",
       "1         Alopochen aegyptiaca       ACCEPTED      SPECIES             EXACT   \n",
       "2  Alternanthera philoxeroides       ACCEPTED      SPECIES             EXACT   \n",
       "3               Ameiurus melas       ACCEPTED      SPECIES             EXACT   \n",
       "4            Asclepias syriaca       ACCEPTED      SPECIES             EXACT   \n",
       "\n",
       "  gbifapi_confidence gbifapi_acceptedKey  \\\n",
       "0                100             3189866   \n",
       "1                100             2498252   \n",
       "2                100             3084923   \n",
       "3                100             2340977   \n",
       "4                 99             3170247   \n",
       "\n",
       "                gbifapi_acceptedScientificName        nbnTaxonID  \n",
       "0                              Acer negundo L.  NBNSYS0000014604  \n",
       "1        Alopochen aegyptiaca (Linnaeus, 1766)  NHMSYS0001689380  \n",
       "2  Alternanthera philoxeroides (Mart.) Griseb.               NaN  \n",
       "3            Ameiurus melas (Rafinesque, 1820)  NHMSYS0000544615  \n",
       "4                         Asclepias syriaca L.  INBSYS0000005932  "
      ]
     },
     "execution_count": 357,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "invasive_species.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 358,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "Index(['NBN_index', 'canonicalName', 'class', 'classKey', 'confidence',\n",
       "       'family', 'familyKey', 'genus', 'genusKey', 'kingdom', 'kingdomKey',\n",
       "       'matchType', 'note', 'order', 'orderKey', 'phylum', 'phylumKey', 'rank',\n",
       "       'scientificName', 'species', 'speciesKey', 'status', 'synonym',\n",
       "       'usageKey', 'acceptedKey', 'acceptedScientificName'],\n",
       "      dtype='object')"
      ]
     },
     "execution_count": 358,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_matched.columns"
   ]
  },
  {
   "cell_type": "raw",
   "metadata": {
    "collapsed": false
   },
   "source": [
    "invasive_species_key = invasive_species[~invasive_species[\"gbifapi_acceptedKey\"].isnull()][['name', 'kingdom', \n",
    "                                                                                            'gbifapi_acceptedKey', \n",
    "                                                                                            'gbifapi_acceptedScientificName']]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 359,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "invasive_species_key = invasive_species[['name', 'kingdom', \n",
    "                                         'gbifapi_acceptedKey', \n",
    "                                         'gbifapi_acceptedScientificName']]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 360,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched_key = recorder_matched[~recorder_matched[\"acceptedKey\"].isnull()][['NBN_index', \n",
    "                                                                                    'acceptedKey', \n",
    "                                                                                    'status', \n",
    "                                                                                    'confidence']]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 368,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "combination = pd.merge(invasive_species_key, \n",
    "                recorder_matched_key, \n",
    "                how='left',\n",
    "                left_on=\"gbifapi_acceptedKey\", \n",
    "                right_on=\"acceptedKey\",\n",
    "                suffixes=('_species', '_recorder'))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 369,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>NBN_index</th>\n",
       "      <th>acceptedKey</th>\n",
       "      <th>status</th>\n",
       "      <th>confidence</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3189866</td>\n",
       "      <td>Acer negundo L.</td>\n",
       "      <td>NBNSYS0000014604</td>\n",
       "      <td>3189866</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>Alopochen aegyptiaca</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2498252</td>\n",
       "      <td>Alopochen aegyptiaca (Linnaeus, 1766)</td>\n",
       "      <td>NHMSYS0001689380</td>\n",
       "      <td>2498252</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>Alternanthera philoxeroides</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3084923</td>\n",
       "      <td>Alternanthera philoxeroides (Mart.) Griseb.</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2340977</td>\n",
       "      <td>Ameiurus melas (Rafinesque, 1820)</td>\n",
       "      <td>NHMSYS0000544615</td>\n",
       "      <td>2340977</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3170247</td>\n",
       "      <td>Asclepias syriaca L.</td>\n",
       "      <td>INBSYS0000005932</td>\n",
       "      <td>3170247</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>Symphyotrichum salignum</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3151811</td>\n",
       "      <td>Symphyotrichum salignum (Willd.) G.L.Nesom</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>Baccharis halimifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>Bison bison</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2441176</td>\n",
       "      <td>Bison bison (Linnaeus, 1758)</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>Cabomba caroliniana</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>2882443</td>\n",
       "      <td>Cabomba caroliniana A. Gray</td>\n",
       "      <td>NHMSYS0000456744</td>\n",
       "      <td>2882443</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>Callosciurus erythraeus</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2437394</td>\n",
       "      <td>Callosciurus erythraeus (Pallas, 1779)</td>\n",
       "      <td>INBSYS0000012711</td>\n",
       "      <td>2437394</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>Caprella mutica</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>5178057</td>\n",
       "      <td>Caprella mutica Schurin, 1935</td>\n",
       "      <td>INBSYS0000046323</td>\n",
       "      <td>5178057</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>Castor canadensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2439838</td>\n",
       "      <td>Castor canadensis Kuhl, 1820</td>\n",
       "      <td>INBSYS0000012718</td>\n",
       "      <td>2439838</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>Castor canadensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2439838</td>\n",
       "      <td>Castor canadensis Kuhl, 1820</td>\n",
       "      <td>INBSYS0000032589</td>\n",
       "      <td>2439838</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>Celastrus orbiculatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>8104460</td>\n",
       "      <td>Celastrus orbiculatus C.P. Thunberg ex A. Murray</td>\n",
       "      <td>NHMSYS0100000968</td>\n",
       "      <td>8104460</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>Corvus splendens</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2482499</td>\n",
       "      <td>Corvus splendens Vieillot, 1817</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>Cotoneaster ambiguus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025858</td>\n",
       "      <td>Cotoneaster ambiguus Rehd. &amp; E.H. Wilson</td>\n",
       "      <td>NHMSYS0000457622</td>\n",
       "      <td>3025858</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>Cotoneaster ascendens</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026024</td>\n",
       "      <td>Cotoneaster ascendens Flinck &amp; B. Hylmö</td>\n",
       "      <td>NHMSYS0000457556</td>\n",
       "      <td>3026024</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>Cotoneaster boisianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026295</td>\n",
       "      <td>Cotoneaster bullatus var. floribundus (Stapf) ...</td>\n",
       "      <td>NBNSYS0100002625</td>\n",
       "      <td>3026295</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>Cotoneaster bullatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026294</td>\n",
       "      <td>Cotoneaster bullatus Bois in Bilm. &amp; Bois</td>\n",
       "      <td>NBNSYS0000004710</td>\n",
       "      <td>3026294</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>Cotoneaster conspicuus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025875</td>\n",
       "      <td>Cotoneaster conspicuus H. F. Comber ex C. Marq...</td>\n",
       "      <td>NHMSYS0000457572</td>\n",
       "      <td>3025875</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>Cotoneaster coriaceus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026035</td>\n",
       "      <td>Cotoneaster coriaceus Franch.</td>\n",
       "      <td>NHMSYS0000457601</td>\n",
       "      <td>3026035</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>Cotoneaster dammeri</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026049</td>\n",
       "      <td>Cotoneaster dammeri C.K. Schneid.</td>\n",
       "      <td>NHMSYS0000457575</td>\n",
       "      <td>3026049</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>Cotoneaster dammeri</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026049</td>\n",
       "      <td>Cotoneaster dammeri C.K. Schneid.</td>\n",
       "      <td>INBSYS0000011373</td>\n",
       "      <td>3026049</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "      <td>NBNSYS0000014211</td>\n",
       "      <td>3025896</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "      <td>NHMSYS0000457576</td>\n",
       "      <td>3025896</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "      <td>INBSYS0000005539</td>\n",
       "      <td>3025896</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "      <td>NBNSYS0100002637</td>\n",
       "      <td>3025896</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>Cotoneaster divaricatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026334</td>\n",
       "      <td>Cotoneaster divaricatus Rehd. &amp; E.H. Wilson</td>\n",
       "      <td>NBNSYS0000014035</td>\n",
       "      <td>3026334</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>Cotoneaster fangianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025932</td>\n",
       "      <td>Cotoneaster fangianus T.T. Yu</td>\n",
       "      <td>NBNSYS0100002626</td>\n",
       "      <td>3025932</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>Cotoneaster franchetii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026162</td>\n",
       "      <td>Cotoneaster franchetii Boiss.</td>\n",
       "      <td>NBNSYS0000014170</td>\n",
       "      <td>3026162</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>194</th>\n",
       "      <td>Rapana venosa</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>4363583</td>\n",
       "      <td>Rapana venosa (Valenciennes, 1846)</td>\n",
       "      <td>INBSYS0000032669</td>\n",
       "      <td>4363583</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>195</th>\n",
       "      <td>Sagittaria latifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5328909</td>\n",
       "      <td>Sagittaria latifolia Willd.</td>\n",
       "      <td>NBNSYS0000002106</td>\n",
       "      <td>5328909</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>196</th>\n",
       "      <td>Sarracenia purpurea</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5421389</td>\n",
       "      <td>Sarracenia purpurea L.</td>\n",
       "      <td>NBNSYS0000003523</td>\n",
       "      <td>5421389</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>197</th>\n",
       "      <td>Sargassum muticum</td>\n",
       "      <td>Eukaryota</td>\n",
       "      <td>3197314</td>\n",
       "      <td>Sargassum muticum (Yendo) Fensholt, 1955</td>\n",
       "      <td>NBNSYS0000188809</td>\n",
       "      <td>3197314</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>95</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>198</th>\n",
       "      <td>Sciurus carolinensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>5219681</td>\n",
       "      <td>Sciurus (Sciurus) carolinensis Gmelin, 1788</td>\n",
       "      <td>NBNSYS0000005109</td>\n",
       "      <td>5219681</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>199</th>\n",
       "      <td>Sciurus carolinensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>5219681</td>\n",
       "      <td>Sciurus (Sciurus) carolinensis Gmelin, 1788</td>\n",
       "      <td>NHMSYS0000332764</td>\n",
       "      <td>5219681</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>200</th>\n",
       "      <td>Sciurus niger</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>5219683</td>\n",
       "      <td>Sciurus (Sciurus) niger Linnaeus, 1758</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>201</th>\n",
       "      <td>Sicyos angulatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>2874655</td>\n",
       "      <td>Sicyos angulatus L.</td>\n",
       "      <td>NBNSYS0000034270</td>\n",
       "      <td>2874655</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>202</th>\n",
       "      <td>Solanum eleagnifolium</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7299960</td>\n",
       "      <td>Solanum eleagnifolium</td>\n",
       "      <td>NBNSYS0200003195</td>\n",
       "      <td>7299960</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>203</th>\n",
       "      <td>Euthamia graminifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3092782</td>\n",
       "      <td>Euthamia graminifolia (L.) Nutt.</td>\n",
       "      <td>INBSYS0000005315</td>\n",
       "      <td>3092782</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>98</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>204</th>\n",
       "      <td>Euthamia graminifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3092782</td>\n",
       "      <td>Euthamia graminifolia (L.) Nutt.</td>\n",
       "      <td>NBNSYS0000004420</td>\n",
       "      <td>3092782</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>98</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>205</th>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290030</td>\n",
       "      <td>Spartina pectinata Bosc ex Link</td>\n",
       "      <td>NBNSYS0000014303</td>\n",
       "      <td>5290030</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>206</th>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290030</td>\n",
       "      <td>Spartina pectinata Bosc ex Link</td>\n",
       "      <td>NHMSYS0000463858</td>\n",
       "      <td>5290030</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>207</th>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290030</td>\n",
       "      <td>Spartina pectinata Bosc ex Link</td>\n",
       "      <td>INBSYS0000009805</td>\n",
       "      <td>5290030</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>208</th>\n",
       "      <td>Spartina townsendii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290034</td>\n",
       "      <td>Spartina townsendii H.Groves &amp; J.Groves</td>\n",
       "      <td>INBSYS0000003939</td>\n",
       "      <td>5290034</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>209</th>\n",
       "      <td>Spartina townsendii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290034</td>\n",
       "      <td>Spartina townsendii H.Groves &amp; J.Groves</td>\n",
       "      <td>NBNSYS0000002679</td>\n",
       "      <td>5290034</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>210</th>\n",
       "      <td>Spartina townsendii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290034</td>\n",
       "      <td>Spartina townsendii H.Groves &amp; J.Groves</td>\n",
       "      <td>NHMSYS0000463860</td>\n",
       "      <td>5290034</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>211</th>\n",
       "      <td>Spiraea salicifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026454</td>\n",
       "      <td>Spiraea salicifolia L.</td>\n",
       "      <td>NHMSYS0000463917</td>\n",
       "      <td>3026454</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>212</th>\n",
       "      <td>Spiraea salicifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026454</td>\n",
       "      <td>Spiraea salicifolia L.</td>\n",
       "      <td>NBNSYS0000003313</td>\n",
       "      <td>3026454</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>213</th>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "      <td>NHMSYS0000463792</td>\n",
       "      <td>3026819</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>214</th>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "      <td>INBSYS0000003949</td>\n",
       "      <td>3026819</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>215</th>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "      <td>NBNSYS0000014018</td>\n",
       "      <td>3026819</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>216</th>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "      <td>NBNSYS0000014176</td>\n",
       "      <td>3026819</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>217</th>\n",
       "      <td>Spiraea pseudosalicifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026444</td>\n",
       "      <td>Spiraea ×pseudosalicifolia Silverside</td>\n",
       "      <td>INBSYS0000003921</td>\n",
       "      <td>3026444</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>88</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>218</th>\n",
       "      <td>Tamias sibiricus</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2437450</td>\n",
       "      <td>Tamias (Eutamias) sibiricus (Laxmann, 1769)</td>\n",
       "      <td>INBSYS0000012543</td>\n",
       "      <td>2437450</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>219</th>\n",
       "      <td>Threskiornis aethiopicus</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2480764</td>\n",
       "      <td>Threskiornis aethiopicus (Latham, 1790)</td>\n",
       "      <td>NHMSYS0000534047</td>\n",
       "      <td>2480764</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>220</th>\n",
       "      <td>Trachemys scripta</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2443002</td>\n",
       "      <td>Trachemys scripta Schoepff, 1792</td>\n",
       "      <td>NHMSYS0000080227</td>\n",
       "      <td>2443002</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>221</th>\n",
       "      <td>Trachemys scripta</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2443002</td>\n",
       "      <td>Trachemys scripta Schoepff, 1792</td>\n",
       "      <td>INBSYS0000012414</td>\n",
       "      <td>2443002</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>222</th>\n",
       "      <td>Vallisneria spiralis</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>2865526</td>\n",
       "      <td>Vallisneria spiralis L.</td>\n",
       "      <td>NBNSYS0000002118</td>\n",
       "      <td>2865526</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>223</th>\n",
       "      <td>Vespa velutina</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>1311477</td>\n",
       "      <td>Vespa velutina Lepeletier, 1836</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>224 rows × 8 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "                            name    kingdom gbifapi_acceptedKey  \\\n",
       "0                   Acer negundo    Plantae             3189866   \n",
       "1           Alopochen aegyptiaca   Animalia             2498252   \n",
       "2    Alternanthera philoxeroides    Plantae             3084923   \n",
       "3                 Ameiurus melas   Animalia             2340977   \n",
       "4              Asclepias syriaca    Plantae             3170247   \n",
       "5        Symphyotrichum salignum    Plantae             3151811   \n",
       "6          Baccharis halimifolia    Plantae                 NaN   \n",
       "7                    Bison bison   Animalia             2441176   \n",
       "8            Cabomba caroliniana    Plantae             2882443   \n",
       "9        Callosciurus erythraeus   Animalia             2437394   \n",
       "10               Caprella mutica   Animalia             5178057   \n",
       "11             Castor canadensis   Animalia             2439838   \n",
       "12             Castor canadensis   Animalia             2439838   \n",
       "13         Celastrus orbiculatus    Plantae             8104460   \n",
       "14              Corvus splendens   Animalia             2482499   \n",
       "15          Cotoneaster ambiguus    Plantae             3025858   \n",
       "16         Cotoneaster ascendens    Plantae             3026024   \n",
       "17         Cotoneaster boisianus    Plantae             3026295   \n",
       "18          Cotoneaster bullatus    Plantae             3026294   \n",
       "19        Cotoneaster conspicuus    Plantae             3025875   \n",
       "20         Cotoneaster coriaceus    Plantae             3026035   \n",
       "21           Cotoneaster dammeri    Plantae             3026049   \n",
       "22           Cotoneaster dammeri    Plantae             3026049   \n",
       "23        Cotoneaster dielsianus    Plantae             3025896   \n",
       "24        Cotoneaster dielsianus    Plantae             3025896   \n",
       "25        Cotoneaster dielsianus    Plantae             3025896   \n",
       "26        Cotoneaster dielsianus    Plantae             3025896   \n",
       "27       Cotoneaster divaricatus    Plantae             3026334   \n",
       "28         Cotoneaster fangianus    Plantae             3025932   \n",
       "29        Cotoneaster franchetii    Plantae             3026162   \n",
       "..                           ...        ...                 ...   \n",
       "194                Rapana venosa   Animalia             4363583   \n",
       "195         Sagittaria latifolia    Plantae             5328909   \n",
       "196          Sarracenia purpurea    Plantae             5421389   \n",
       "197            Sargassum muticum  Eukaryota             3197314   \n",
       "198         Sciurus carolinensis   Animalia             5219681   \n",
       "199         Sciurus carolinensis   Animalia             5219681   \n",
       "200                Sciurus niger   Animalia             5219683   \n",
       "201             Sicyos angulatus    Plantae             2874655   \n",
       "202        Solanum eleagnifolium    Plantae             7299960   \n",
       "203        Euthamia graminifolia    Plantae             3092782   \n",
       "204        Euthamia graminifolia    Plantae             3092782   \n",
       "205           Spartina pectinata    Plantae             5290030   \n",
       "206           Spartina pectinata    Plantae             5290030   \n",
       "207           Spartina pectinata    Plantae             5290030   \n",
       "208          Spartina townsendii    Plantae             5290034   \n",
       "209          Spartina townsendii    Plantae             5290034   \n",
       "210          Spartina townsendii    Plantae             5290034   \n",
       "211          Spiraea salicifolia    Plantae             3026454   \n",
       "212          Spiraea salicifolia    Plantae             3026454   \n",
       "213            Spiraea tomentosa    Plantae             3026819   \n",
       "214            Spiraea tomentosa    Plantae             3026819   \n",
       "215            Spiraea tomentosa    Plantae             3026819   \n",
       "216            Spiraea tomentosa    Plantae             3026819   \n",
       "217    Spiraea pseudosalicifolia    Plantae             3026444   \n",
       "218             Tamias sibiricus   Animalia             2437450   \n",
       "219     Threskiornis aethiopicus   Animalia             2480764   \n",
       "220            Trachemys scripta   Animalia             2443002   \n",
       "221            Trachemys scripta   Animalia             2443002   \n",
       "222         Vallisneria spiralis    Plantae             2865526   \n",
       "223               Vespa velutina   Animalia             1311477   \n",
       "\n",
       "                        gbifapi_acceptedScientificName         NBN_index  \\\n",
       "0                                      Acer negundo L.  NBNSYS0000014604   \n",
       "1                Alopochen aegyptiaca (Linnaeus, 1766)  NHMSYS0001689380   \n",
       "2          Alternanthera philoxeroides (Mart.) Griseb.               NaN   \n",
       "3                    Ameiurus melas (Rafinesque, 1820)  NHMSYS0000544615   \n",
       "4                                 Asclepias syriaca L.  INBSYS0000005932   \n",
       "5           Symphyotrichum salignum (Willd.) G.L.Nesom               NaN   \n",
       "6                                                  NaN               NaN   \n",
       "7                         Bison bison (Linnaeus, 1758)               NaN   \n",
       "8                          Cabomba caroliniana A. Gray  NHMSYS0000456744   \n",
       "9               Callosciurus erythraeus (Pallas, 1779)  INBSYS0000012711   \n",
       "10                       Caprella mutica Schurin, 1935  INBSYS0000046323   \n",
       "11                        Castor canadensis Kuhl, 1820  INBSYS0000012718   \n",
       "12                        Castor canadensis Kuhl, 1820  INBSYS0000032589   \n",
       "13    Celastrus orbiculatus C.P. Thunberg ex A. Murray  NHMSYS0100000968   \n",
       "14                     Corvus splendens Vieillot, 1817               NaN   \n",
       "15            Cotoneaster ambiguus Rehd. & E.H. Wilson  NHMSYS0000457622   \n",
       "16             Cotoneaster ascendens Flinck & B. Hylmö  NHMSYS0000457556   \n",
       "17   Cotoneaster bullatus var. floribundus (Stapf) ...  NBNSYS0100002625   \n",
       "18           Cotoneaster bullatus Bois in Bilm. & Bois  NBNSYS0000004710   \n",
       "19   Cotoneaster conspicuus H. F. Comber ex C. Marq...  NHMSYS0000457572   \n",
       "20                       Cotoneaster coriaceus Franch.  NHMSYS0000457601   \n",
       "21                   Cotoneaster dammeri C.K. Schneid.  NHMSYS0000457575   \n",
       "22                   Cotoneaster dammeri C.K. Schneid.  INBSYS0000011373   \n",
       "23                    Cotoneaster dielsianus E. Pritz.  NBNSYS0000014211   \n",
       "24                    Cotoneaster dielsianus E. Pritz.  NHMSYS0000457576   \n",
       "25                    Cotoneaster dielsianus E. Pritz.  INBSYS0000005539   \n",
       "26                    Cotoneaster dielsianus E. Pritz.  NBNSYS0100002637   \n",
       "27         Cotoneaster divaricatus Rehd. & E.H. Wilson  NBNSYS0000014035   \n",
       "28                       Cotoneaster fangianus T.T. Yu  NBNSYS0100002626   \n",
       "29                       Cotoneaster franchetii Boiss.  NBNSYS0000014170   \n",
       "..                                                 ...               ...   \n",
       "194                 Rapana venosa (Valenciennes, 1846)  INBSYS0000032669   \n",
       "195                        Sagittaria latifolia Willd.  NBNSYS0000002106   \n",
       "196                             Sarracenia purpurea L.  NBNSYS0000003523   \n",
       "197           Sargassum muticum (Yendo) Fensholt, 1955  NBNSYS0000188809   \n",
       "198        Sciurus (Sciurus) carolinensis Gmelin, 1788  NBNSYS0000005109   \n",
       "199        Sciurus (Sciurus) carolinensis Gmelin, 1788  NHMSYS0000332764   \n",
       "200             Sciurus (Sciurus) niger Linnaeus, 1758               NaN   \n",
       "201                                Sicyos angulatus L.  NBNSYS0000034270   \n",
       "202                              Solanum eleagnifolium  NBNSYS0200003195   \n",
       "203                   Euthamia graminifolia (L.) Nutt.  INBSYS0000005315   \n",
       "204                   Euthamia graminifolia (L.) Nutt.  NBNSYS0000004420   \n",
       "205                    Spartina pectinata Bosc ex Link  NBNSYS0000014303   \n",
       "206                    Spartina pectinata Bosc ex Link  NHMSYS0000463858   \n",
       "207                    Spartina pectinata Bosc ex Link  INBSYS0000009805   \n",
       "208            Spartina townsendii H.Groves & J.Groves  INBSYS0000003939   \n",
       "209            Spartina townsendii H.Groves & J.Groves  NBNSYS0000002679   \n",
       "210            Spartina townsendii H.Groves & J.Groves  NHMSYS0000463860   \n",
       "211                             Spiraea salicifolia L.  NHMSYS0000463917   \n",
       "212                             Spiraea salicifolia L.  NBNSYS0000003313   \n",
       "213                               Spiraea tomentosa L.  NHMSYS0000463792   \n",
       "214                               Spiraea tomentosa L.  INBSYS0000003949   \n",
       "215                               Spiraea tomentosa L.  NBNSYS0000014018   \n",
       "216                               Spiraea tomentosa L.  NBNSYS0000014176   \n",
       "217              Spiraea ×pseudosalicifolia Silverside  INBSYS0000003921   \n",
       "218        Tamias (Eutamias) sibiricus (Laxmann, 1769)  INBSYS0000012543   \n",
       "219            Threskiornis aethiopicus (Latham, 1790)  NHMSYS0000534047   \n",
       "220                   Trachemys scripta Schoepff, 1792  NHMSYS0000080227   \n",
       "221                   Trachemys scripta Schoepff, 1792  INBSYS0000012414   \n",
       "222                            Vallisneria spiralis L.  NBNSYS0000002118   \n",
       "223                    Vespa velutina Lepeletier, 1836               NaN   \n",
       "\n",
       "    acceptedKey    status confidence  \n",
       "0       3189866  ACCEPTED        100  \n",
       "1       2498252   SYNONYM        100  \n",
       "2           NaN       NaN        NaN  \n",
       "3       2340977  ACCEPTED        100  \n",
       "4       3170247  ACCEPTED         99  \n",
       "5           NaN       NaN        NaN  \n",
       "6           NaN       NaN        NaN  \n",
       "7           NaN       NaN        NaN  \n",
       "8       2882443  ACCEPTED        100  \n",
       "9       2437394  ACCEPTED        100  \n",
       "10      5178057  ACCEPTED        100  \n",
       "11      2439838  ACCEPTED        100  \n",
       "12      2439838  ACCEPTED        100  \n",
       "13      8104460  ACCEPTED         99  \n",
       "14          NaN       NaN        NaN  \n",
       "15      3025858   SYNONYM        100  \n",
       "16      3026024  ACCEPTED        100  \n",
       "17      3026295   SYNONYM        100  \n",
       "18      3026294  ACCEPTED        100  \n",
       "19      3025875  ACCEPTED         99  \n",
       "20      3026035   SYNONYM        100  \n",
       "21      3026049  ACCEPTED        100  \n",
       "22      3026049  ACCEPTED        100  \n",
       "23      3025896  ACCEPTED         99  \n",
       "24      3025896  ACCEPTED         99  \n",
       "25      3025896  ACCEPTED         99  \n",
       "26      3025896   SYNONYM        100  \n",
       "27      3026334  ACCEPTED        100  \n",
       "28      3025932  ACCEPTED        100  \n",
       "29      3026162   SYNONYM        100  \n",
       "..          ...       ...        ...  \n",
       "194     4363583  ACCEPTED        100  \n",
       "195     5328909  ACCEPTED        100  \n",
       "196     5421389  ACCEPTED         99  \n",
       "197     3197314  ACCEPTED         95  \n",
       "198     5219681  ACCEPTED        100  \n",
       "199     5219681  ACCEPTED        100  \n",
       "200         NaN       NaN        NaN  \n",
       "201     2874655  ACCEPTED         99  \n",
       "202     7299960  ACCEPTED        100  \n",
       "203     3092782   SYNONYM         98  \n",
       "204     3092782   SYNONYM         98  \n",
       "205     5290030  ACCEPTED        100  \n",
       "206     5290030  ACCEPTED        100  \n",
       "207     5290030  ACCEPTED        100  \n",
       "208     5290034  ACCEPTED        100  \n",
       "209     5290034  ACCEPTED        100  \n",
       "210     5290034  ACCEPTED        100  \n",
       "211     3026454  ACCEPTED         99  \n",
       "212     3026454  ACCEPTED         99  \n",
       "213     3026819   SYNONYM        100  \n",
       "214     3026819   SYNONYM        100  \n",
       "215     3026819   SYNONYM        100  \n",
       "216     3026819  ACCEPTED         99  \n",
       "217     3026444  ACCEPTED         88  \n",
       "218     2437450  ACCEPTED        100  \n",
       "219     2480764  ACCEPTED        100  \n",
       "220     2443002  ACCEPTED         99  \n",
       "221     2443002  ACCEPTED         99  \n",
       "222     2865526  ACCEPTED        100  \n",
       "223         NaN       NaN        NaN  \n",
       "\n",
       "[224 rows x 8 columns]"
      ]
     },
     "execution_count": 369,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "combination"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 370,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "species_info_recorder_matches = pd.merge(combination, recorder_names, how='left', left_on=\"NBN_index\", \n",
    "                                         right_on=\"RECOMMENDED_TAXON_VERSION_KEY\",\n",
    "                                         suffixes=('_x', '_recorder'))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 371,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "species_info_recorder_matches = species_info_recorder_matches.drop([\"RECOMMENDED_TAXON_VERSION_KEY\", \n",
    "                                                                    \"acceptedKey\", \"kingdom_recorder\"],axis=1)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 372,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "species_info_recorder_matches = species_info_recorder_matches.rename(columns={\"kingdom_x\":\"kingdom\", \n",
    "                                              \"status\":\"NBN_status\",\n",
    "                                              \"confidence\":\"NBN_confidence\",\n",
    "                                              \"scientificName\":\"NBN_scientificName\",\n",
    "                                              \"TAXON_GROUP_NAME\":\"NBN_taxon_group_info\"\n",
    "                                             })"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 373,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "name                              object\n",
       "kingdom                           object\n",
       "gbifapi_acceptedKey               object\n",
       "gbifapi_acceptedScientificName    object\n",
       "NBN_index                         object\n",
       "NBN_status                        object\n",
       "NBN_confidence                    object\n",
       "NBN_scientificName                object\n",
       "NBN_taxon_group_info              object\n",
       "dtype: object"
      ]
     },
     "execution_count": 373,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "species_info_recorder_matches.dtypes"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 376,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>NBN_index</th>\n",
       "      <th>NBN_status</th>\n",
       "      <th>NBN_confidence</th>\n",
       "      <th>NBN_scientificName</th>\n",
       "      <th>NBN_taxon_group_info</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3189866</td>\n",
       "      <td>Acer negundo L.</td>\n",
       "      <td>NBNSYS0000014604</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>Alopochen aegyptiaca</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2498252</td>\n",
       "      <td>Alopochen aegyptiaca (Linnaeus, 1766)</td>\n",
       "      <td>NHMSYS0001689380</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Alopochen aegyptiacus</td>\n",
       "      <td>vogel</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>Alternanthera philoxeroides</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3084923</td>\n",
       "      <td>Alternanthera philoxeroides (Mart.) Griseb.</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2340977</td>\n",
       "      <td>Ameiurus melas (Rafinesque, 1820)</td>\n",
       "      <td>NHMSYS0000544615</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>beenvis (Actinopterygii)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3170247</td>\n",
       "      <td>Asclepias syriaca L.</td>\n",
       "      <td>INBSYS0000005932</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>Symphyotrichum salignum</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3151811</td>\n",
       "      <td>Symphyotrichum salignum (Willd.) G.L.Nesom</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>Baccharis halimifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>Bison bison</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2441176</td>\n",
       "      <td>Bison bison (Linnaeus, 1758)</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>Cabomba caroliniana</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>2882443</td>\n",
       "      <td>Cabomba caroliniana A. Gray</td>\n",
       "      <td>NHMSYS0000456744</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Cabomba caroliniana</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>Callosciurus erythraeus</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2437394</td>\n",
       "      <td>Callosciurus erythraeus (Pallas, 1779)</td>\n",
       "      <td>INBSYS0000012711</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Callosciurus erythraeus</td>\n",
       "      <td>landzoogdier</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>Caprella mutica</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>5178057</td>\n",
       "      <td>Caprella mutica Schurin, 1935</td>\n",
       "      <td>INBSYS0000046323</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Caprella mutica</td>\n",
       "      <td>schaaldier</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>Castor canadensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2439838</td>\n",
       "      <td>Castor canadensis Kuhl, 1820</td>\n",
       "      <td>INBSYS0000012718</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Castor canadensis</td>\n",
       "      <td>landzoogdier</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>Castor canadensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2439838</td>\n",
       "      <td>Castor canadensis Kuhl, 1820</td>\n",
       "      <td>INBSYS0000032589</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Castor canadensis</td>\n",
       "      <td>landzoogdier</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>Celastrus orbiculatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>8104460</td>\n",
       "      <td>Celastrus orbiculatus C.P. Thunberg ex A. Murray</td>\n",
       "      <td>NHMSYS0100000968</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Celastrus orbiculatus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>Corvus splendens</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2482499</td>\n",
       "      <td>Corvus splendens Vieillot, 1817</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>Cotoneaster ambiguus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025858</td>\n",
       "      <td>Cotoneaster ambiguus Rehd. &amp; E.H. Wilson</td>\n",
       "      <td>NHMSYS0000457622</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster pseudoambiguus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>Cotoneaster ascendens</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026024</td>\n",
       "      <td>Cotoneaster ascendens Flinck &amp; B. Hylmö</td>\n",
       "      <td>NHMSYS0000457556</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster ascendens</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>Cotoneaster boisianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026295</td>\n",
       "      <td>Cotoneaster bullatus var. floribundus (Stapf) ...</td>\n",
       "      <td>NBNSYS0100002625</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster boisianus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>Cotoneaster bullatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026294</td>\n",
       "      <td>Cotoneaster bullatus Bois in Bilm. &amp; Bois</td>\n",
       "      <td>NBNSYS0000004710</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster bullatus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>Cotoneaster conspicuus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025875</td>\n",
       "      <td>Cotoneaster conspicuus H. F. Comber ex C. Marq...</td>\n",
       "      <td>NHMSYS0000457572</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Cotoneaster conspicuus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>Cotoneaster coriaceus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026035</td>\n",
       "      <td>Cotoneaster coriaceus Franch.</td>\n",
       "      <td>NHMSYS0000457601</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster lacteus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>Cotoneaster dammeri</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026049</td>\n",
       "      <td>Cotoneaster dammeri C.K. Schneid.</td>\n",
       "      <td>NHMSYS0000457575</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster dammeri</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>Cotoneaster dammeri</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026049</td>\n",
       "      <td>Cotoneaster dammeri C.K. Schneid.</td>\n",
       "      <td>INBSYS0000011373</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster dammeri</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "      <td>NBNSYS0000014211</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "      <td>NHMSYS0000457576</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "      <td>INBSYS0000005539</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "      <td>NBNSYS0100002637</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster vilmorinianus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>Cotoneaster divaricatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026334</td>\n",
       "      <td>Cotoneaster divaricatus Rehd. &amp; E.H. Wilson</td>\n",
       "      <td>NBNSYS0000014035</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster divaricatus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>Cotoneaster fangianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3025932</td>\n",
       "      <td>Cotoneaster fangianus T.T. Yu</td>\n",
       "      <td>NBNSYS0100002626</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster fangianus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>Cotoneaster franchetii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026162</td>\n",
       "      <td>Cotoneaster franchetii Boiss.</td>\n",
       "      <td>NBNSYS0000014170</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Cotoneaster insculptus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>194</th>\n",
       "      <td>Rapana venosa</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>4363583</td>\n",
       "      <td>Rapana venosa (Valenciennes, 1846)</td>\n",
       "      <td>INBSYS0000032669</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Rapana venosa</td>\n",
       "      <td>mollusk (Mollusca)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>195</th>\n",
       "      <td>Sagittaria latifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5328909</td>\n",
       "      <td>Sagittaria latifolia Willd.</td>\n",
       "      <td>NBNSYS0000002106</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Sagittaria latifolia</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>196</th>\n",
       "      <td>Sarracenia purpurea</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5421389</td>\n",
       "      <td>Sarracenia purpurea L.</td>\n",
       "      <td>NBNSYS0000003523</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Sarracenia purpurea</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>197</th>\n",
       "      <td>Sargassum muticum</td>\n",
       "      <td>Eukaryota</td>\n",
       "      <td>3197314</td>\n",
       "      <td>Sargassum muticum (Yendo) Fensholt, 1955</td>\n",
       "      <td>NBNSYS0000188809</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>95</td>\n",
       "      <td>Sargassum muticum</td>\n",
       "      <td>wier</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>198</th>\n",
       "      <td>Sciurus carolinensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>5219681</td>\n",
       "      <td>Sciurus (Sciurus) carolinensis Gmelin, 1788</td>\n",
       "      <td>NBNSYS0000005109</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Sciurus carolinensis</td>\n",
       "      <td>landzoogdier</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>199</th>\n",
       "      <td>Sciurus carolinensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>5219681</td>\n",
       "      <td>Sciurus (Sciurus) carolinensis Gmelin, 1788</td>\n",
       "      <td>NHMSYS0000332764</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Sciurus carolinensis</td>\n",
       "      <td>landzoogdier</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>200</th>\n",
       "      <td>Sciurus niger</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>5219683</td>\n",
       "      <td>Sciurus (Sciurus) niger Linnaeus, 1758</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>201</th>\n",
       "      <td>Sicyos angulatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>2874655</td>\n",
       "      <td>Sicyos angulatus L.</td>\n",
       "      <td>NBNSYS0000034270</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Sicyos angulatus</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>202</th>\n",
       "      <td>Solanum eleagnifolium</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7299960</td>\n",
       "      <td>Solanum eleagnifolium</td>\n",
       "      <td>NBNSYS0200003195</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Solanum eleagnifolium</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>203</th>\n",
       "      <td>Euthamia graminifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3092782</td>\n",
       "      <td>Euthamia graminifolia (L.) Nutt.</td>\n",
       "      <td>INBSYS0000005315</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>98</td>\n",
       "      <td>Erigeron annuus (L.) Desf. subsp. septentrionalis</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>204</th>\n",
       "      <td>Euthamia graminifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3092782</td>\n",
       "      <td>Euthamia graminifolia (L.) Nutt.</td>\n",
       "      <td>NBNSYS0000004420</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>98</td>\n",
       "      <td>Solidago graminifolia</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>205</th>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290030</td>\n",
       "      <td>Spartina pectinata Bosc ex Link</td>\n",
       "      <td>NBNSYS0000014303</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>206</th>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290030</td>\n",
       "      <td>Spartina pectinata Bosc ex Link</td>\n",
       "      <td>NHMSYS0000463858</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>207</th>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290030</td>\n",
       "      <td>Spartina pectinata Bosc ex Link</td>\n",
       "      <td>INBSYS0000009805</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>208</th>\n",
       "      <td>Spartina townsendii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290034</td>\n",
       "      <td>Spartina townsendii H.Groves &amp; J.Groves</td>\n",
       "      <td>INBSYS0000003939</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Spartina townsendii</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>209</th>\n",
       "      <td>Spartina townsendii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290034</td>\n",
       "      <td>Spartina townsendii H.Groves &amp; J.Groves</td>\n",
       "      <td>NBNSYS0000002679</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Spartina x townsendii</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>210</th>\n",
       "      <td>Spartina townsendii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>5290034</td>\n",
       "      <td>Spartina townsendii H.Groves &amp; J.Groves</td>\n",
       "      <td>NHMSYS0000463860</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Spartina x townsendii</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>211</th>\n",
       "      <td>Spiraea salicifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026454</td>\n",
       "      <td>Spiraea salicifolia L.</td>\n",
       "      <td>NHMSYS0000463917</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Spiraea salicifolia agg.</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>212</th>\n",
       "      <td>Spiraea salicifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026454</td>\n",
       "      <td>Spiraea salicifolia L.</td>\n",
       "      <td>NBNSYS0000003313</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Spiraea salicifolia</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>213</th>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "      <td>NHMSYS0000463792</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Sorbaria tomentosa</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>214</th>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "      <td>INBSYS0000003949</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Sorbaria tomentosa</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>215</th>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "      <td>NBNSYS0000014018</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Sorbaria tomentosa</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>216</th>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "      <td>NBNSYS0000014176</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>217</th>\n",
       "      <td>Spiraea pseudosalicifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3026444</td>\n",
       "      <td>Spiraea ×pseudosalicifolia Silverside</td>\n",
       "      <td>INBSYS0000003921</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>88</td>\n",
       "      <td>Spiraea x pseudosalicifolius</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>218</th>\n",
       "      <td>Tamias sibiricus</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2437450</td>\n",
       "      <td>Tamias (Eutamias) sibiricus (Laxmann, 1769)</td>\n",
       "      <td>INBSYS0000012543</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Tamias sibiricus</td>\n",
       "      <td>landzoogdier</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>219</th>\n",
       "      <td>Threskiornis aethiopicus</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2480764</td>\n",
       "      <td>Threskiornis aethiopicus (Latham, 1790)</td>\n",
       "      <td>NHMSYS0000534047</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Threskiornis aethiopicus</td>\n",
       "      <td>vogel</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>220</th>\n",
       "      <td>Trachemys scripta</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2443002</td>\n",
       "      <td>Trachemys scripta Schoepff, 1792</td>\n",
       "      <td>NHMSYS0000080227</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Trachemys scripta</td>\n",
       "      <td>reptiel</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>221</th>\n",
       "      <td>Trachemys scripta</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2443002</td>\n",
       "      <td>Trachemys scripta Schoepff, 1792</td>\n",
       "      <td>INBSYS0000012414</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Trachemys scripta</td>\n",
       "      <td>reptiel</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>222</th>\n",
       "      <td>Vallisneria spiralis</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>2865526</td>\n",
       "      <td>Vallisneria spiralis L.</td>\n",
       "      <td>NBNSYS0000002118</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Vallisneria spiralis</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>223</th>\n",
       "      <td>Vespa velutina</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>1311477</td>\n",
       "      <td>Vespa velutina Lepeletier, 1836</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>224 rows × 9 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "                            name    kingdom gbifapi_acceptedKey  \\\n",
       "0                   Acer negundo    Plantae             3189866   \n",
       "1           Alopochen aegyptiaca   Animalia             2498252   \n",
       "2    Alternanthera philoxeroides    Plantae             3084923   \n",
       "3                 Ameiurus melas   Animalia             2340977   \n",
       "4              Asclepias syriaca    Plantae             3170247   \n",
       "5        Symphyotrichum salignum    Plantae             3151811   \n",
       "6          Baccharis halimifolia    Plantae                 NaN   \n",
       "7                    Bison bison   Animalia             2441176   \n",
       "8            Cabomba caroliniana    Plantae             2882443   \n",
       "9        Callosciurus erythraeus   Animalia             2437394   \n",
       "10               Caprella mutica   Animalia             5178057   \n",
       "11             Castor canadensis   Animalia             2439838   \n",
       "12             Castor canadensis   Animalia             2439838   \n",
       "13         Celastrus orbiculatus    Plantae             8104460   \n",
       "14              Corvus splendens   Animalia             2482499   \n",
       "15          Cotoneaster ambiguus    Plantae             3025858   \n",
       "16         Cotoneaster ascendens    Plantae             3026024   \n",
       "17         Cotoneaster boisianus    Plantae             3026295   \n",
       "18          Cotoneaster bullatus    Plantae             3026294   \n",
       "19        Cotoneaster conspicuus    Plantae             3025875   \n",
       "20         Cotoneaster coriaceus    Plantae             3026035   \n",
       "21           Cotoneaster dammeri    Plantae             3026049   \n",
       "22           Cotoneaster dammeri    Plantae             3026049   \n",
       "23        Cotoneaster dielsianus    Plantae             3025896   \n",
       "24        Cotoneaster dielsianus    Plantae             3025896   \n",
       "25        Cotoneaster dielsianus    Plantae             3025896   \n",
       "26        Cotoneaster dielsianus    Plantae             3025896   \n",
       "27       Cotoneaster divaricatus    Plantae             3026334   \n",
       "28         Cotoneaster fangianus    Plantae             3025932   \n",
       "29        Cotoneaster franchetii    Plantae             3026162   \n",
       "..                           ...        ...                 ...   \n",
       "194                Rapana venosa   Animalia             4363583   \n",
       "195         Sagittaria latifolia    Plantae             5328909   \n",
       "196          Sarracenia purpurea    Plantae             5421389   \n",
       "197            Sargassum muticum  Eukaryota             3197314   \n",
       "198         Sciurus carolinensis   Animalia             5219681   \n",
       "199         Sciurus carolinensis   Animalia             5219681   \n",
       "200                Sciurus niger   Animalia             5219683   \n",
       "201             Sicyos angulatus    Plantae             2874655   \n",
       "202        Solanum eleagnifolium    Plantae             7299960   \n",
       "203        Euthamia graminifolia    Plantae             3092782   \n",
       "204        Euthamia graminifolia    Plantae             3092782   \n",
       "205           Spartina pectinata    Plantae             5290030   \n",
       "206           Spartina pectinata    Plantae             5290030   \n",
       "207           Spartina pectinata    Plantae             5290030   \n",
       "208          Spartina townsendii    Plantae             5290034   \n",
       "209          Spartina townsendii    Plantae             5290034   \n",
       "210          Spartina townsendii    Plantae             5290034   \n",
       "211          Spiraea salicifolia    Plantae             3026454   \n",
       "212          Spiraea salicifolia    Plantae             3026454   \n",
       "213            Spiraea tomentosa    Plantae             3026819   \n",
       "214            Spiraea tomentosa    Plantae             3026819   \n",
       "215            Spiraea tomentosa    Plantae             3026819   \n",
       "216            Spiraea tomentosa    Plantae             3026819   \n",
       "217    Spiraea pseudosalicifolia    Plantae             3026444   \n",
       "218             Tamias sibiricus   Animalia             2437450   \n",
       "219     Threskiornis aethiopicus   Animalia             2480764   \n",
       "220            Trachemys scripta   Animalia             2443002   \n",
       "221            Trachemys scripta   Animalia             2443002   \n",
       "222         Vallisneria spiralis    Plantae             2865526   \n",
       "223               Vespa velutina   Animalia             1311477   \n",
       "\n",
       "                        gbifapi_acceptedScientificName         NBN_index  \\\n",
       "0                                      Acer negundo L.  NBNSYS0000014604   \n",
       "1                Alopochen aegyptiaca (Linnaeus, 1766)  NHMSYS0001689380   \n",
       "2          Alternanthera philoxeroides (Mart.) Griseb.               NaN   \n",
       "3                    Ameiurus melas (Rafinesque, 1820)  NHMSYS0000544615   \n",
       "4                                 Asclepias syriaca L.  INBSYS0000005932   \n",
       "5           Symphyotrichum salignum (Willd.) G.L.Nesom               NaN   \n",
       "6                                                  NaN               NaN   \n",
       "7                         Bison bison (Linnaeus, 1758)               NaN   \n",
       "8                          Cabomba caroliniana A. Gray  NHMSYS0000456744   \n",
       "9               Callosciurus erythraeus (Pallas, 1779)  INBSYS0000012711   \n",
       "10                       Caprella mutica Schurin, 1935  INBSYS0000046323   \n",
       "11                        Castor canadensis Kuhl, 1820  INBSYS0000012718   \n",
       "12                        Castor canadensis Kuhl, 1820  INBSYS0000032589   \n",
       "13    Celastrus orbiculatus C.P. Thunberg ex A. Murray  NHMSYS0100000968   \n",
       "14                     Corvus splendens Vieillot, 1817               NaN   \n",
       "15            Cotoneaster ambiguus Rehd. & E.H. Wilson  NHMSYS0000457622   \n",
       "16             Cotoneaster ascendens Flinck & B. Hylmö  NHMSYS0000457556   \n",
       "17   Cotoneaster bullatus var. floribundus (Stapf) ...  NBNSYS0100002625   \n",
       "18           Cotoneaster bullatus Bois in Bilm. & Bois  NBNSYS0000004710   \n",
       "19   Cotoneaster conspicuus H. F. Comber ex C. Marq...  NHMSYS0000457572   \n",
       "20                       Cotoneaster coriaceus Franch.  NHMSYS0000457601   \n",
       "21                   Cotoneaster dammeri C.K. Schneid.  NHMSYS0000457575   \n",
       "22                   Cotoneaster dammeri C.K. Schneid.  INBSYS0000011373   \n",
       "23                    Cotoneaster dielsianus E. Pritz.  NBNSYS0000014211   \n",
       "24                    Cotoneaster dielsianus E. Pritz.  NHMSYS0000457576   \n",
       "25                    Cotoneaster dielsianus E. Pritz.  INBSYS0000005539   \n",
       "26                    Cotoneaster dielsianus E. Pritz.  NBNSYS0100002637   \n",
       "27         Cotoneaster divaricatus Rehd. & E.H. Wilson  NBNSYS0000014035   \n",
       "28                       Cotoneaster fangianus T.T. Yu  NBNSYS0100002626   \n",
       "29                       Cotoneaster franchetii Boiss.  NBNSYS0000014170   \n",
       "..                                                 ...               ...   \n",
       "194                 Rapana venosa (Valenciennes, 1846)  INBSYS0000032669   \n",
       "195                        Sagittaria latifolia Willd.  NBNSYS0000002106   \n",
       "196                             Sarracenia purpurea L.  NBNSYS0000003523   \n",
       "197           Sargassum muticum (Yendo) Fensholt, 1955  NBNSYS0000188809   \n",
       "198        Sciurus (Sciurus) carolinensis Gmelin, 1788  NBNSYS0000005109   \n",
       "199        Sciurus (Sciurus) carolinensis Gmelin, 1788  NHMSYS0000332764   \n",
       "200             Sciurus (Sciurus) niger Linnaeus, 1758               NaN   \n",
       "201                                Sicyos angulatus L.  NBNSYS0000034270   \n",
       "202                              Solanum eleagnifolium  NBNSYS0200003195   \n",
       "203                   Euthamia graminifolia (L.) Nutt.  INBSYS0000005315   \n",
       "204                   Euthamia graminifolia (L.) Nutt.  NBNSYS0000004420   \n",
       "205                    Spartina pectinata Bosc ex Link  NBNSYS0000014303   \n",
       "206                    Spartina pectinata Bosc ex Link  NHMSYS0000463858   \n",
       "207                    Spartina pectinata Bosc ex Link  INBSYS0000009805   \n",
       "208            Spartina townsendii H.Groves & J.Groves  INBSYS0000003939   \n",
       "209            Spartina townsendii H.Groves & J.Groves  NBNSYS0000002679   \n",
       "210            Spartina townsendii H.Groves & J.Groves  NHMSYS0000463860   \n",
       "211                             Spiraea salicifolia L.  NHMSYS0000463917   \n",
       "212                             Spiraea salicifolia L.  NBNSYS0000003313   \n",
       "213                               Spiraea tomentosa L.  NHMSYS0000463792   \n",
       "214                               Spiraea tomentosa L.  INBSYS0000003949   \n",
       "215                               Spiraea tomentosa L.  NBNSYS0000014018   \n",
       "216                               Spiraea tomentosa L.  NBNSYS0000014176   \n",
       "217              Spiraea ×pseudosalicifolia Silverside  INBSYS0000003921   \n",
       "218        Tamias (Eutamias) sibiricus (Laxmann, 1769)  INBSYS0000012543   \n",
       "219            Threskiornis aethiopicus (Latham, 1790)  NHMSYS0000534047   \n",
       "220                   Trachemys scripta Schoepff, 1792  NHMSYS0000080227   \n",
       "221                   Trachemys scripta Schoepff, 1792  INBSYS0000012414   \n",
       "222                            Vallisneria spiralis L.  NBNSYS0000002118   \n",
       "223                    Vespa velutina Lepeletier, 1836               NaN   \n",
       "\n",
       "    NBN_status NBN_confidence  \\\n",
       "0     ACCEPTED            100   \n",
       "1      SYNONYM            100   \n",
       "2          NaN            NaN   \n",
       "3     ACCEPTED            100   \n",
       "4     ACCEPTED             99   \n",
       "5          NaN            NaN   \n",
       "6          NaN            NaN   \n",
       "7          NaN            NaN   \n",
       "8     ACCEPTED            100   \n",
       "9     ACCEPTED            100   \n",
       "10    ACCEPTED            100   \n",
       "11    ACCEPTED            100   \n",
       "12    ACCEPTED            100   \n",
       "13    ACCEPTED             99   \n",
       "14         NaN            NaN   \n",
       "15     SYNONYM            100   \n",
       "16    ACCEPTED            100   \n",
       "17     SYNONYM            100   \n",
       "18    ACCEPTED            100   \n",
       "19    ACCEPTED             99   \n",
       "20     SYNONYM            100   \n",
       "21    ACCEPTED            100   \n",
       "22    ACCEPTED            100   \n",
       "23    ACCEPTED             99   \n",
       "24    ACCEPTED             99   \n",
       "25    ACCEPTED             99   \n",
       "26     SYNONYM            100   \n",
       "27    ACCEPTED            100   \n",
       "28    ACCEPTED            100   \n",
       "29     SYNONYM            100   \n",
       "..         ...            ...   \n",
       "194   ACCEPTED            100   \n",
       "195   ACCEPTED            100   \n",
       "196   ACCEPTED             99   \n",
       "197   ACCEPTED             95   \n",
       "198   ACCEPTED            100   \n",
       "199   ACCEPTED            100   \n",
       "200        NaN            NaN   \n",
       "201   ACCEPTED             99   \n",
       "202   ACCEPTED            100   \n",
       "203    SYNONYM             98   \n",
       "204    SYNONYM             98   \n",
       "205   ACCEPTED            100   \n",
       "206   ACCEPTED            100   \n",
       "207   ACCEPTED            100   \n",
       "208   ACCEPTED            100   \n",
       "209   ACCEPTED            100   \n",
       "210   ACCEPTED            100   \n",
       "211   ACCEPTED             99   \n",
       "212   ACCEPTED             99   \n",
       "213    SYNONYM            100   \n",
       "214    SYNONYM            100   \n",
       "215    SYNONYM            100   \n",
       "216   ACCEPTED             99   \n",
       "217   ACCEPTED             88   \n",
       "218   ACCEPTED            100   \n",
       "219   ACCEPTED            100   \n",
       "220   ACCEPTED             99   \n",
       "221   ACCEPTED             99   \n",
       "222   ACCEPTED            100   \n",
       "223        NaN            NaN   \n",
       "\n",
       "                                    NBN_scientificName  \\\n",
       "0                                         Acer negundo   \n",
       "1                                Alopochen aegyptiacus   \n",
       "2                                                  NaN   \n",
       "3                                       Ameiurus melas   \n",
       "4                                    Asclepias syriaca   \n",
       "5                                                  NaN   \n",
       "6                                                  NaN   \n",
       "7                                                  NaN   \n",
       "8                                  Cabomba caroliniana   \n",
       "9                              Callosciurus erythraeus   \n",
       "10                                     Caprella mutica   \n",
       "11                                   Castor canadensis   \n",
       "12                                   Castor canadensis   \n",
       "13                               Celastrus orbiculatus   \n",
       "14                                                 NaN   \n",
       "15                          Cotoneaster pseudoambiguus   \n",
       "16                               Cotoneaster ascendens   \n",
       "17                               Cotoneaster boisianus   \n",
       "18                                Cotoneaster bullatus   \n",
       "19                              Cotoneaster conspicuus   \n",
       "20                                 Cotoneaster lacteus   \n",
       "21                                 Cotoneaster dammeri   \n",
       "22                                 Cotoneaster dammeri   \n",
       "23                              Cotoneaster dielsianus   \n",
       "24                              Cotoneaster dielsianus   \n",
       "25                              Cotoneaster dielsianus   \n",
       "26                           Cotoneaster vilmorinianus   \n",
       "27                             Cotoneaster divaricatus   \n",
       "28                               Cotoneaster fangianus   \n",
       "29                              Cotoneaster insculptus   \n",
       "..                                                 ...   \n",
       "194                                      Rapana venosa   \n",
       "195                               Sagittaria latifolia   \n",
       "196                                Sarracenia purpurea   \n",
       "197                                  Sargassum muticum   \n",
       "198                               Sciurus carolinensis   \n",
       "199                               Sciurus carolinensis   \n",
       "200                                                NaN   \n",
       "201                                   Sicyos angulatus   \n",
       "202                              Solanum eleagnifolium   \n",
       "203  Erigeron annuus (L.) Desf. subsp. septentrionalis   \n",
       "204                              Solidago graminifolia   \n",
       "205                                 Spartina pectinata   \n",
       "206                                 Spartina pectinata   \n",
       "207                                 Spartina pectinata   \n",
       "208                                Spartina townsendii   \n",
       "209                              Spartina x townsendii   \n",
       "210                              Spartina x townsendii   \n",
       "211                           Spiraea salicifolia agg.   \n",
       "212                                Spiraea salicifolia   \n",
       "213                                 Sorbaria tomentosa   \n",
       "214                                 Sorbaria tomentosa   \n",
       "215                                 Sorbaria tomentosa   \n",
       "216                                  Spiraea tomentosa   \n",
       "217                       Spiraea x pseudosalicifolius   \n",
       "218                                   Tamias sibiricus   \n",
       "219                           Threskiornis aethiopicus   \n",
       "220                                  Trachemys scripta   \n",
       "221                                  Trachemys scripta   \n",
       "222                               Vallisneria spiralis   \n",
       "223                                                NaN   \n",
       "\n",
       "         NBN_taxon_group_info  \n",
       "0                  bloemplant  \n",
       "1                       vogel  \n",
       "2                         NaN  \n",
       "3    beenvis (Actinopterygii)  \n",
       "4                  bloemplant  \n",
       "5                         NaN  \n",
       "6                         NaN  \n",
       "7                         NaN  \n",
       "8                  bloemplant  \n",
       "9                landzoogdier  \n",
       "10                 schaaldier  \n",
       "11               landzoogdier  \n",
       "12               landzoogdier  \n",
       "13                 bloemplant  \n",
       "14                        NaN  \n",
       "15                 bloemplant  \n",
       "16                 bloemplant  \n",
       "17                 bloemplant  \n",
       "18                 bloemplant  \n",
       "19                 bloemplant  \n",
       "20                 bloemplant  \n",
       "21                 bloemplant  \n",
       "22                 bloemplant  \n",
       "23                 bloemplant  \n",
       "24                 bloemplant  \n",
       "25                 bloemplant  \n",
       "26                 bloemplant  \n",
       "27                 bloemplant  \n",
       "28                 bloemplant  \n",
       "29                 bloemplant  \n",
       "..                        ...  \n",
       "194        mollusk (Mollusca)  \n",
       "195                bloemplant  \n",
       "196                bloemplant  \n",
       "197                      wier  \n",
       "198              landzoogdier  \n",
       "199              landzoogdier  \n",
       "200                       NaN  \n",
       "201                bloemplant  \n",
       "202                bloemplant  \n",
       "203                bloemplant  \n",
       "204                bloemplant  \n",
       "205                bloemplant  \n",
       "206                bloemplant  \n",
       "207                bloemplant  \n",
       "208                bloemplant  \n",
       "209                bloemplant  \n",
       "210                bloemplant  \n",
       "211                bloemplant  \n",
       "212                bloemplant  \n",
       "213                bloemplant  \n",
       "214                bloemplant  \n",
       "215                bloemplant  \n",
       "216                bloemplant  \n",
       "217                bloemplant  \n",
       "218              landzoogdier  \n",
       "219                     vogel  \n",
       "220                   reptiel  \n",
       "221                   reptiel  \n",
       "222                bloemplant  \n",
       "223                       NaN  \n",
       "\n",
       "[224 rows x 9 columns]"
      ]
     },
     "execution_count": 376,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "species_info_recorder_matches"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "###  Manual additions and adaptations accoring to issue #28"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "https://github.com/LifeWatchINBO/invasive-t0-occurrences/issues/28"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 377,
   "metadata": {
    "collapsed": false,
    "scrolled": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>NBN_index</th>\n",
       "      <th>NBN_status</th>\n",
       "      <th>NBN_confidence</th>\n",
       "      <th>NBN_scientificName</th>\n",
       "      <th>NBN_taxon_group_info</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3189866</td>\n",
       "      <td>Acer negundo L.</td>\n",
       "      <td>NBNSYS0000014604</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>Alopochen aegyptiaca</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2498252</td>\n",
       "      <td>Alopochen aegyptiaca (Linnaeus, 1766)</td>\n",
       "      <td>NHMSYS0001689380</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Alopochen aegyptiacus</td>\n",
       "      <td>vogel</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>Alternanthera philoxeroides</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3084923</td>\n",
       "      <td>Alternanthera philoxeroides (Mart.) Griseb.</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2340977</td>\n",
       "      <td>Ameiurus melas (Rafinesque, 1820)</td>\n",
       "      <td>NHMSYS0000544615</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>beenvis (Actinopterygii)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3170247</td>\n",
       "      <td>Asclepias syriaca L.</td>\n",
       "      <td>INBSYS0000005932</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                          name   kingdom gbifapi_acceptedKey  \\\n",
       "0                 Acer negundo   Plantae             3189866   \n",
       "1         Alopochen aegyptiaca  Animalia             2498252   \n",
       "2  Alternanthera philoxeroides   Plantae             3084923   \n",
       "3               Ameiurus melas  Animalia             2340977   \n",
       "4            Asclepias syriaca   Plantae             3170247   \n",
       "\n",
       "                gbifapi_acceptedScientificName         NBN_index NBN_status  \\\n",
       "0                              Acer negundo L.  NBNSYS0000014604   ACCEPTED   \n",
       "1        Alopochen aegyptiaca (Linnaeus, 1766)  NHMSYS0001689380    SYNONYM   \n",
       "2  Alternanthera philoxeroides (Mart.) Griseb.               NaN        NaN   \n",
       "3            Ameiurus melas (Rafinesque, 1820)  NHMSYS0000544615   ACCEPTED   \n",
       "4                         Asclepias syriaca L.  INBSYS0000005932   ACCEPTED   \n",
       "\n",
       "  NBN_confidence     NBN_scientificName      NBN_taxon_group_info  \n",
       "0            100           Acer negundo                bloemplant  \n",
       "1            100  Alopochen aegyptiacus                     vogel  \n",
       "2            NaN                    NaN                       NaN  \n",
       "3            100         Ameiurus melas  beenvis (Actinopterygii)  \n",
       "4             99      Asclepias syriaca                bloemplant  "
      ]
     },
     "execution_count": 377,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "species_info_recorder_matches.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 378,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
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       "    <tr style=\"text-align: right;\">\n",
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       "      <th>class</th>\n",
       "      <th>classKey</th>\n",
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       "      <th>species</th>\n",
       "      <th>speciesKey</th>\n",
       "      <th>status</th>\n",
       "      <th>synonym</th>\n",
       "      <th>usageKey</th>\n",
       "      <th>acceptedKey</th>\n",
       "      <th>acceptedScientificName</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>54806</th>\n",
       "      <td>INBSYS0000009678</td>\n",
       "      <td>Oenothera angustissima</td>\n",
       "      <td>Magnoliopsida</td>\n",
       "      <td>220</td>\n",
       "      <td>100</td>\n",
       "      <td>Onagraceae</td>\n",
       "      <td>2430</td>\n",
       "      <td>Oenothera</td>\n",
       "      <td>3188799</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>...</td>\n",
       "      <td>7707728</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>Oenothera angustissima Gates</td>\n",
       "      <td>Oenothera angustissima</td>\n",
       "      <td>3188889</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>False</td>\n",
       "      <td>3188889</td>\n",
       "      <td>3188889</td>\n",
       "      <td>Oenothera angustissima Gates</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>1 rows × 26 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "              NBN_index           canonicalName          class classKey  \\\n",
       "54806  INBSYS0000009678  Oenothera angustissima  Magnoliopsida      220   \n",
       "\n",
       "      confidence      family familyKey      genus genusKey  kingdom  \\\n",
       "54806        100  Onagraceae      2430  Oenothera  3188799  Plantae   \n",
       "\n",
       "                   ...              phylumKey     rank  \\\n",
       "54806              ...                7707728  SPECIES   \n",
       "\n",
       "                     scientificName                 species speciesKey  \\\n",
       "54806  Oenothera angustissima Gates  Oenothera angustissima    3188889   \n",
       "\n",
       "         status synonym usageKey acceptedKey        acceptedScientificName  \n",
       "54806  ACCEPTED   False  3188889     3188889  Oenothera angustissima Gates  \n",
       "\n",
       "[1 rows x 26 columns]"
      ]
     },
     "execution_count": 378,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "recorder_matched[recorder_matched[\"canonicalName\"] == \"Oenothera angustissima\"]"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Retrieved by Queries from Recorder:\n",
    "\n",
    "* NBN code for Aster x salignus: NBNSYS0000004434"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "#### Manually add codes"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 379,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "idx = species_info_recorder_matches[species_info_recorder_matches[\"name\"] == \"Symphyotrichum salignum\"].index\n",
    "species_info_recorder_matches.loc[idx, \"NBN_index\"] = \"NBNSYS0000004434\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 380,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>NBN_index</th>\n",
       "      <th>NBN_status</th>\n",
       "      <th>NBN_confidence</th>\n",
       "      <th>NBN_scientificName</th>\n",
       "      <th>NBN_taxon_group_info</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>Symphyotrichum salignum</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3151811</td>\n",
       "      <td>Symphyotrichum salignum (Willd.) G.L.Nesom</td>\n",
       "      <td>NBNSYS0000004434</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                      name  kingdom gbifapi_acceptedKey  \\\n",
       "5  Symphyotrichum salignum  Plantae             3151811   \n",
       "\n",
       "               gbifapi_acceptedScientificName         NBN_index NBN_status  \\\n",
       "5  Symphyotrichum salignum (Willd.) G.L.Nesom  NBNSYS0000004434        NaN   \n",
       "\n",
       "  NBN_confidence NBN_scientificName NBN_taxon_group_info  \n",
       "5            NaN                NaN                  NaN  "
      ]
     },
     "execution_count": 380,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "species_info_recorder_matches.iloc[idx]"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Oenothera angustissima -> solved"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Oenothera x fallax -> solved"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "#### Remove NBN code, as it is already mapped elsewhere"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Oenothera biennis -> solved"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Oenothera oakesiana -> solved"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Oenothera pycnocarpa -> solved"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Parthenocissus inserta -> solved"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Parthenocissus quinquefolia -> solved"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 381,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "#species_info_recorder_matches.loc[list2remove, \"NBN_index\"] = np.nan"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Cotoneaster integrifolius  -> HIGHERRAN K to kingdom, no NBN-match, so considered ok"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Oenothera depressa -> solved"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "#### Recorder original dbase names of IDS taken into account of species list:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 382,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "temp = species_info_recorder_matches[\"NBN_index\"].dropna().values.tolist()\n",
    "temp = [el for el in temp if len(el)>0]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 383,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_names.set_index(\"RECOMMENDED_TAXON_VERSION_KEY\").loc[temp].to_csv(\"recorder_identifiers_in_species_list.csv\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 384,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>NBN_index</th>\n",
       "      <th>NBN_status</th>\n",
       "      <th>NBN_confidence</th>\n",
       "      <th>NBN_scientificName</th>\n",
       "      <th>NBN_taxon_group_info</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>152</th>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7322738</td>\n",
       "      <td>Oenothera perangusta Gates</td>\n",
       "      <td>NBNSYS0000013948</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>159</th>\n",
       "      <td>Oenothera rubricalyx</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7322738</td>\n",
       "      <td>Oenothera perangusta Gates</td>\n",
       "      <td>NBNSYS0000013948</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                     name  kingdom gbifapi_acceptedKey  \\\n",
       "152  Oenothera perangusta  Plantae             7322738   \n",
       "159  Oenothera rubricalyx  Plantae             7322738   \n",
       "\n",
       "    gbifapi_acceptedScientificName         NBN_index NBN_status  \\\n",
       "152     Oenothera perangusta Gates  NBNSYS0000013948   ACCEPTED   \n",
       "159     Oenothera perangusta Gates  NBNSYS0000013948   ACCEPTED   \n",
       "\n",
       "    NBN_confidence    NBN_scientificName NBN_taxon_group_info  \n",
       "152            100  Oenothera perangusta           bloemplant  \n",
       "159            100  Oenothera perangusta           bloemplant  "
      ]
     },
     "execution_count": 384,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "species_info_recorder_matches[species_info_recorder_matches[\"NBN_index\"] == \"NBNSYS0000013948\"]"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "#### Query creation: prepare ids"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Prepare the set of NBN-identifiers to make the query in the recorder dbase:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 76,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "species_info_recorder_matches = species_info_recorder_matches.fillna('')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 77,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "key_list_dbase = \"','\".join(species_info_recorder_matches[\"NBN_index\"].values.tolist())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 78,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "import re"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 79,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "key_list_dbase = re.sub(\",''\",\"\", key_list_dbase)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "re.sub(\"[0-9],[A-Z]\", \"','\", key_list_dbase)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "key_list_dbase"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Reformat the table back to the original format by combining multiple references"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 419,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "grouped_species_list = species_info_recorder_matches[[\"name\", \"kingdom\", \"gbifapi_acceptedKey\", \"gbifapi_acceptedScientificName\"]].drop_duplicates()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 420,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>152</th>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7322738</td>\n",
       "      <td>Oenothera perangusta Gates</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>159</th>\n",
       "      <td>Oenothera rubricalyx</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7322738</td>\n",
       "      <td>Oenothera perangusta Gates</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                     name  kingdom gbifapi_acceptedKey  \\\n",
       "152  Oenothera perangusta  Plantae             7322738   \n",
       "159  Oenothera rubricalyx  Plantae             7322738   \n",
       "\n",
       "    gbifapi_acceptedScientificName  \n",
       "152     Oenothera perangusta Gates  \n",
       "159     Oenothera perangusta Gates  "
      ]
     },
     "execution_count": 420,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "grouped_species_list[grouped_species_list[\"gbifapi_acceptedKey\"] == \"7322738\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 421,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "grouped_species_list = grouped_species_list.set_index(\"name\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 422,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>NBN_index</th>\n",
       "      <th>NBN_status</th>\n",
       "      <th>NBN_confidence</th>\n",
       "      <th>NBN_scientificName</th>\n",
       "      <th>NBN_taxon_group_info</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>152</th>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7322738</td>\n",
       "      <td>Oenothera perangusta Gates</td>\n",
       "      <td>NBNSYS0000013948</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>159</th>\n",
       "      <td>Oenothera rubricalyx</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7322738</td>\n",
       "      <td>Oenothera perangusta Gates</td>\n",
       "      <td>NBNSYS0000013948</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                     name  kingdom gbifapi_acceptedKey  \\\n",
       "152  Oenothera perangusta  Plantae             7322738   \n",
       "159  Oenothera rubricalyx  Plantae             7322738   \n",
       "\n",
       "    gbifapi_acceptedScientificName         NBN_index NBN_status  \\\n",
       "152     Oenothera perangusta Gates  NBNSYS0000013948   ACCEPTED   \n",
       "159     Oenothera perangusta Gates  NBNSYS0000013948   ACCEPTED   \n",
       "\n",
       "    NBN_confidence    NBN_scientificName NBN_taxon_group_info  \n",
       "152            100  Oenothera perangusta           bloemplant  \n",
       "159            100  Oenothera perangusta           bloemplant  "
      ]
     },
     "execution_count": 422,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "species_info_recorder_matches[species_info_recorder_matches[\"NBN_index\"] == \"NBNSYS0000013948\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 423,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "species_info_recorder_matches[\"NBN_scientificName\"] = species_info_recorder_matches[\"NBN_scientificName\"].astype(str)\n",
    "temp = species_info_recorder_matches.groupby('name')[\"NBN_scientificName\"].apply(','.join)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 424,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "for NBN in [\"NBN_index\", \"NBN_status\", \"NBN_confidence\", \"NBN_scientificName\", \"NBN_taxon_group_info\"]:\n",
    "    species_info_recorder_matches[NBN] = species_info_recorder_matches[NBN].astype(str)\n",
    "    grouped_species_list[NBN] = species_info_recorder_matches.groupby('name')[NBN].apply(','.join)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 426,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "grouped_species_list = grouped_species_list.reset_index()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 427,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "grouped_species_list = grouped_species_list.rename(columns={\"NBN_index\":\"nbnTaxonID\"})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 428,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "#grouped_species_list.to_csv(\"species_list_with_recorder_version.csv\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 429,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "grouped_species_list[\"nbnTaxonID\"] = grouped_species_list[\"nbnTaxonID\"].replace('(,,+)', ',', regex=True)\n",
    "grouped_species_list[\"nbnTaxonID\"] = grouped_species_list[\"nbnTaxonID\"].replace('^,', '', regex=True)\n",
    "grouped_species_list[\"nbnTaxonID\"] = grouped_species_list[\"nbnTaxonID\"].replace(',$', '', regex=True)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 430,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "pandas_df_to_markdown_table(grouped_species_list)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 432,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>nbnTaxonID</th>\n",
       "      <th>NBN_status</th>\n",
       "      <th>NBN_confidence</th>\n",
       "      <th>NBN_scientificName</th>\n",
       "      <th>NBN_taxon_group_info</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>102</th>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7322738</td>\n",
       "      <td>Oenothera perangusta Gates</td>\n",
       "      <td>NBNSYS0000013948</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>107</th>\n",
       "      <td>Oenothera rubricalyx</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>7322738</td>\n",
       "      <td>Oenothera perangusta Gates</td>\n",
       "      <td>NBNSYS0000013948</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Oenothera perangusta</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                     name  kingdom gbifapi_acceptedKey  \\\n",
       "102  Oenothera perangusta  Plantae             7322738   \n",
       "107  Oenothera rubricalyx  Plantae             7322738   \n",
       "\n",
       "    gbifapi_acceptedScientificName        nbnTaxonID NBN_status  \\\n",
       "102     Oenothera perangusta Gates  NBNSYS0000013948   ACCEPTED   \n",
       "107     Oenothera perangusta Gates  NBNSYS0000013948   ACCEPTED   \n",
       "\n",
       "    NBN_confidence    NBN_scientificName NBN_taxon_group_info  \n",
       "102            100  Oenothera perangusta           bloemplant  \n",
       "107            100  Oenothera perangusta           bloemplant  "
      ]
     },
     "execution_count": 432,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "grouped_species_list[grouped_species_list[\"nbnTaxonID\"] == \"NBNSYS0000013948\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 443,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>index</th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>euConcernStatus</th>\n",
       "      <th>gbifapi_usageKey</th>\n",
       "      <th>gbifapi_scientificName</th>\n",
       "      <th>gbifapi_canonicalName</th>\n",
       "      <th>gbifapi_status</th>\n",
       "      <th>gbifapi_rank</th>\n",
       "      <th>gbifapi_matchType</th>\n",
       "      <th>gbifapi_confidence</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>0</td>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>3189866</td>\n",
       "      <td>Acer negundo L.</td>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3189866</td>\n",
       "      <td>Acer negundo L.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>1</td>\n",
       "      <td>Alopochen aegyptiaca</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>2498252</td>\n",
       "      <td>Alopochen aegyptiaca (Linnaeus, 1766)</td>\n",
       "      <td>Alopochen aegyptiaca</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2498252</td>\n",
       "      <td>Alopochen aegyptiaca (Linnaeus, 1766)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>2</td>\n",
       "      <td>Alternanthera philoxeroides</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>3084923</td>\n",
       "      <td>Alternanthera philoxeroides (Mart.) Griseb.</td>\n",
       "      <td>Alternanthera philoxeroides</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3084923</td>\n",
       "      <td>Alternanthera philoxeroides (Mart.) Griseb.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>3</td>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>2340977</td>\n",
       "      <td>Ameiurus melas (Rafinesque, 1820)</td>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2340977</td>\n",
       "      <td>Ameiurus melas (Rafinesque, 1820)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>4</td>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>3170247</td>\n",
       "      <td>Asclepias syriaca L.</td>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>3170247</td>\n",
       "      <td>Asclepias syriaca L.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>5</td>\n",
       "      <td>Symphyotrichum salignum</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3151811</td>\n",
       "      <td>Symphyotrichum salignum (Willd.) G.L.Nesom</td>\n",
       "      <td>Symphyotrichum salignum</td>\n",
       "      <td>DOUBTFUL</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3151811</td>\n",
       "      <td>Symphyotrichum salignum (Willd.) G.L.Nesom</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>6</td>\n",
       "      <td>Baccharis halimifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>listed</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>7</td>\n",
       "      <td>Bison bison</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>2441176</td>\n",
       "      <td>Bison bison (Linnaeus, 1758)</td>\n",
       "      <td>Bison bison</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2441176</td>\n",
       "      <td>Bison bison (Linnaeus, 1758)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>8</td>\n",
       "      <td>Cabomba caroliniana</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>listed</td>\n",
       "      <td>2882443</td>\n",
       "      <td>Cabomba caroliniana A. Gray</td>\n",
       "      <td>Cabomba caroliniana</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2882443</td>\n",
       "      <td>Cabomba caroliniana A. Gray</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>9</td>\n",
       "      <td>Callosciurus erythraeus</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>2437394</td>\n",
       "      <td>Callosciurus erythraeus (Pallas, 1779)</td>\n",
       "      <td>Callosciurus erythraeus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2437394</td>\n",
       "      <td>Callosciurus erythraeus (Pallas, 1779)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>10</td>\n",
       "      <td>Caprella mutica</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>not listed</td>\n",
       "      <td>5178057</td>\n",
       "      <td>Caprella mutica Schurin, 1935</td>\n",
       "      <td>Caprella mutica</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>5178057</td>\n",
       "      <td>Caprella mutica Schurin, 1935</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>11</td>\n",
       "      <td>Castor canadensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>NaN</td>\n",
       "      <td>2439838</td>\n",
       "      <td>Castor canadensis Kuhl, 1820</td>\n",
       "      <td>Castor canadensis</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2439838</td>\n",
       "      <td>Castor canadensis Kuhl, 1820</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>12</td>\n",
       "      <td>Celastrus orbiculatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>8104460</td>\n",
       "      <td>Celastrus orbiculatus C.P. Thunberg ex A. Murray</td>\n",
       "      <td>Celastrus orbiculatus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>8104460</td>\n",
       "      <td>Celastrus orbiculatus C.P. Thunberg ex A. Murray</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>13</td>\n",
       "      <td>Corvus splendens</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>2482499</td>\n",
       "      <td>Corvus splendens Vieillot, 1817</td>\n",
       "      <td>Corvus splendens</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2482499</td>\n",
       "      <td>Corvus splendens Vieillot, 1817</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>14</td>\n",
       "      <td>Cotoneaster ambiguus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3025858</td>\n",
       "      <td>Cotoneaster ambiguus Rehd. &amp; E.H. Wilson</td>\n",
       "      <td>Cotoneaster ambiguus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3025858</td>\n",
       "      <td>Cotoneaster ambiguus Rehd. &amp; E.H. Wilson</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>15</td>\n",
       "      <td>Cotoneaster ascendens</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026024</td>\n",
       "      <td>Cotoneaster ascendens Flinck &amp; B. Hylmö</td>\n",
       "      <td>Cotoneaster ascendens</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026024</td>\n",
       "      <td>Cotoneaster ascendens Flinck &amp; B. Hylmö</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>16</td>\n",
       "      <td>Cotoneaster boisianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026167</td>\n",
       "      <td>Cotoneaster boisianus G. Klotz</td>\n",
       "      <td>Cotoneaster boisianus</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026295</td>\n",
       "      <td>Cotoneaster bullatus var. floribundus (Stapf) ...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>17</td>\n",
       "      <td>Cotoneaster bullatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026294</td>\n",
       "      <td>Cotoneaster bullatus Bois in Bilm. &amp; Bois</td>\n",
       "      <td>Cotoneaster bullatus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026294</td>\n",
       "      <td>Cotoneaster bullatus Bois in Bilm. &amp; Bois</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>18</td>\n",
       "      <td>Cotoneaster conspicuus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3025875</td>\n",
       "      <td>Cotoneaster conspicuus H. F. Comber ex C. Marq...</td>\n",
       "      <td>Cotoneaster conspicuus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>3025875</td>\n",
       "      <td>Cotoneaster conspicuus H. F. Comber ex C. Marq...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>19</td>\n",
       "      <td>Cotoneaster coriaceus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026035</td>\n",
       "      <td>Cotoneaster coriaceus Franch.</td>\n",
       "      <td>Cotoneaster coriaceus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026035</td>\n",
       "      <td>Cotoneaster coriaceus Franch.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>20</td>\n",
       "      <td>Cotoneaster dammeri</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026049</td>\n",
       "      <td>Cotoneaster dammeri C.K. Schneid.</td>\n",
       "      <td>Cotoneaster dammeri</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026049</td>\n",
       "      <td>Cotoneaster dammeri C.K. Schneid.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>21</td>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "      <td>Cotoneaster dielsianus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>3025896</td>\n",
       "      <td>Cotoneaster dielsianus E. Pritz.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>22</td>\n",
       "      <td>Cotoneaster divaricatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026334</td>\n",
       "      <td>Cotoneaster divaricatus Rehd. &amp; E.H. Wilson</td>\n",
       "      <td>Cotoneaster divaricatus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026334</td>\n",
       "      <td>Cotoneaster divaricatus Rehd. &amp; E.H. Wilson</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>23</td>\n",
       "      <td>Cotoneaster fangianus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3025932</td>\n",
       "      <td>Cotoneaster fangianus T.T. Yu</td>\n",
       "      <td>Cotoneaster fangianus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3025932</td>\n",
       "      <td>Cotoneaster fangianus T.T. Yu</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>24</td>\n",
       "      <td>Cotoneaster franchetii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026162</td>\n",
       "      <td>Cotoneaster franchetii Boiss.</td>\n",
       "      <td>Cotoneaster franchetii</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026162</td>\n",
       "      <td>Cotoneaster franchetii Boiss.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>25</td>\n",
       "      <td>Cotoneaster ganghobaensis</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3025989</td>\n",
       "      <td>Cotoneaster ganghobaensis J. Fryer &amp; B. Hylmö</td>\n",
       "      <td>Cotoneaster ganghobaensis</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026007</td>\n",
       "      <td>Cotoneaster lambertii G. Klotz</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>26</td>\n",
       "      <td>Cotoneaster hjelmqvistii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026092</td>\n",
       "      <td>Cotoneaster hjelmqvistii K.E. Flinck &amp; B. Hylmö</td>\n",
       "      <td>Cotoneaster hjelmqvistii</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026092</td>\n",
       "      <td>Cotoneaster hjelmqvistii K.E. Flinck &amp; B. Hylmö</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>27</td>\n",
       "      <td>Cotoneaster horizontalis</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3025617</td>\n",
       "      <td>Cotoneaster horizontalis Decne</td>\n",
       "      <td>Cotoneaster horizontalis</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>3025617</td>\n",
       "      <td>Cotoneaster horizontalis Decne</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>28</td>\n",
       "      <td>Cotoneaster hylmoei</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3025758</td>\n",
       "      <td>Cotoneaster hylmoei K.E. Flinck &amp; J. Fryer</td>\n",
       "      <td>Cotoneaster hylmoei</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026076</td>\n",
       "      <td>Cotoneaster salicifolius var. rugosus (E. Prit...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>29</td>\n",
       "      <td>Cotoneaster integrifolius</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>122</th>\n",
       "      <td>129</td>\n",
       "      <td>Parthenocissus quinquefolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3039194</td>\n",
       "      <td>Parthenocissus quinquefolia (L.) Planchon</td>\n",
       "      <td>Parthenocissus quinquefolia</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>3039194</td>\n",
       "      <td>Parthenocissus quinquefolia (L.) Planchon</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>123</th>\n",
       "      <td>131</td>\n",
       "      <td>Parthenocissus tricuspidata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3039209</td>\n",
       "      <td>Parthenocissus tricuspidata (Siebold &amp; Zucc.) ...</td>\n",
       "      <td>Parthenocissus tricuspidata</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3039209</td>\n",
       "      <td>Parthenocissus tricuspidata (Siebold &amp; Zucc.) ...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>124</th>\n",
       "      <td>132</td>\n",
       "      <td>Pennisetum setaceum</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>under consideration</td>\n",
       "      <td>2706134</td>\n",
       "      <td>Pennisetum setaceum (Forssk.) Chiov.</td>\n",
       "      <td>Pennisetum setaceum</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2706134</td>\n",
       "      <td>Pennisetum setaceum (Forssk.) Chiov.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>125</th>\n",
       "      <td>133</td>\n",
       "      <td>Perccottus glenii</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>2390064</td>\n",
       "      <td>Perccottus glenii Dybowski, 1877</td>\n",
       "      <td>Perccottus glenii</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2390064</td>\n",
       "      <td>Perccottus glenii Dybowski, 1877</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>126</th>\n",
       "      <td>134</td>\n",
       "      <td>Persicaria perfoliata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>listed</td>\n",
       "      <td>4033648</td>\n",
       "      <td>Persicaria perfoliata (L.) H. Gross</td>\n",
       "      <td>Persicaria perfoliata</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>4037171</td>\n",
       "      <td>Truellum perfoliatum (L.) Soják</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>127</th>\n",
       "      <td>135</td>\n",
       "      <td>Pontederia cordata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>2766030</td>\n",
       "      <td>Pontederia cordata L.</td>\n",
       "      <td>Pontederia cordata</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2766030</td>\n",
       "      <td>Pontederia cordata L.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>128</th>\n",
       "      <td>136</td>\n",
       "      <td>Procambarus clarkii</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>2227300</td>\n",
       "      <td>Procambarus (Scapulicambarus) clarkii (Girard,...</td>\n",
       "      <td>Procambarus clarkii</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2227300</td>\n",
       "      <td>Procambarus (Scapulicambarus) clarkii (Girard,...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>129</th>\n",
       "      <td>137</td>\n",
       "      <td>Procambarus fallax f. virginalis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>130</th>\n",
       "      <td>138</td>\n",
       "      <td>Procyon lotor</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>5218786</td>\n",
       "      <td>Procyon lotor (Linnaeus, 1758)</td>\n",
       "      <td>Procyon lotor</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>5218786</td>\n",
       "      <td>Procyon lotor (Linnaeus, 1758)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>131</th>\n",
       "      <td>139</td>\n",
       "      <td>Pseudorasbora parva</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>2362868</td>\n",
       "      <td>Pseudorasbora parva (Temminck &amp; Schlegel, 1846)</td>\n",
       "      <td>Pseudorasbora parva</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2362868</td>\n",
       "      <td>Pseudorasbora parva (Temminck &amp; Schlegel, 1846)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>132</th>\n",
       "      <td>140</td>\n",
       "      <td>Pueraria montana</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>listed</td>\n",
       "      <td>2977636</td>\n",
       "      <td>Pueraria montana (Lour.)Merr.</td>\n",
       "      <td>Pueraria montana</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>5352354</td>\n",
       "      <td>Anthyllis montana L.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>133</th>\n",
       "      <td>141</td>\n",
       "      <td>Rapana venosa</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>not listed</td>\n",
       "      <td>4363583</td>\n",
       "      <td>Rapana venosa (Valenciennes, 1846)</td>\n",
       "      <td>Rapana venosa</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>4363583</td>\n",
       "      <td>Rapana venosa (Valenciennes, 1846)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>134</th>\n",
       "      <td>142</td>\n",
       "      <td>Sagittaria latifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>5328909</td>\n",
       "      <td>Sagittaria latifolia Willd.</td>\n",
       "      <td>Sagittaria latifolia</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>5328909</td>\n",
       "      <td>Sagittaria latifolia Willd.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>135</th>\n",
       "      <td>143</td>\n",
       "      <td>Sarracenia purpurea</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>5421389</td>\n",
       "      <td>Sarracenia purpurea L.</td>\n",
       "      <td>Sarracenia purpurea</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>5421389</td>\n",
       "      <td>Sarracenia purpurea L.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>136</th>\n",
       "      <td>144</td>\n",
       "      <td>Sargassum muticum</td>\n",
       "      <td>Eukaryota</td>\n",
       "      <td>not listed</td>\n",
       "      <td>3197314</td>\n",
       "      <td>Sargassum muticum (Yendo) Fensholt, 1955</td>\n",
       "      <td>Sargassum muticum</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>95</td>\n",
       "      <td>3197314</td>\n",
       "      <td>Sargassum muticum (Yendo) Fensholt, 1955</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>137</th>\n",
       "      <td>145</td>\n",
       "      <td>Sciurus carolinensis</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>5219681</td>\n",
       "      <td>Sciurus (Sciurus) carolinensis Gmelin, 1788</td>\n",
       "      <td>Sciurus carolinensis</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>5219681</td>\n",
       "      <td>Sciurus (Sciurus) carolinensis Gmelin, 1788</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>138</th>\n",
       "      <td>146</td>\n",
       "      <td>Sciurus niger</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>5219683</td>\n",
       "      <td>Sciurus (Sciurus) niger Linnaeus, 1758</td>\n",
       "      <td>Sciurus niger</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>5219683</td>\n",
       "      <td>Sciurus (Sciurus) niger Linnaeus, 1758</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>139</th>\n",
       "      <td>147</td>\n",
       "      <td>Sicyos angulatus</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>not listed</td>\n",
       "      <td>2874655</td>\n",
       "      <td>Sicyos angulatus L.</td>\n",
       "      <td>Sicyos angulatus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>2874655</td>\n",
       "      <td>Sicyos angulatus L.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>140</th>\n",
       "      <td>148</td>\n",
       "      <td>Solanum eleagnifolium</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>not listed</td>\n",
       "      <td>7299960</td>\n",
       "      <td>Solanum eleagnifolium</td>\n",
       "      <td>Solanum eleagnifolium</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>7299960</td>\n",
       "      <td>Solanum eleagnifolium</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>141</th>\n",
       "      <td>149</td>\n",
       "      <td>Euthamia graminifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>under preparation</td>\n",
       "      <td>3092782</td>\n",
       "      <td>Euthamia graminifolia (L.) Nutt.</td>\n",
       "      <td>Euthamia graminifolia</td>\n",
       "      <td>DOUBTFUL</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>97</td>\n",
       "      <td>3092782</td>\n",
       "      <td>Euthamia graminifolia (L.) Nutt.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>142</th>\n",
       "      <td>150</td>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>5290030</td>\n",
       "      <td>Spartina pectinata Bosc ex Link</td>\n",
       "      <td>Spartina pectinata</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>5290030</td>\n",
       "      <td>Spartina pectinata Bosc ex Link</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>143</th>\n",
       "      <td>151</td>\n",
       "      <td>Spartina townsendii</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>5290034</td>\n",
       "      <td>Spartina townsendii H.Groves &amp; J.Groves</td>\n",
       "      <td>Spartina townsendii</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>5290034</td>\n",
       "      <td>Spartina townsendii H.Groves &amp; J.Groves</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>144</th>\n",
       "      <td>152</td>\n",
       "      <td>Spiraea salicifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026454</td>\n",
       "      <td>Spiraea salicifolia L.</td>\n",
       "      <td>Spiraea salicifolia</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>3026454</td>\n",
       "      <td>Spiraea salicifolia L.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>145</th>\n",
       "      <td>153</td>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>under preparation</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "      <td>Spiraea tomentosa</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>3026819</td>\n",
       "      <td>Spiraea tomentosa L.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>146</th>\n",
       "      <td>154</td>\n",
       "      <td>Spiraea pseudosalicifolia</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3026444</td>\n",
       "      <td>Spiraea ×pseudosalicifolia Silverside</td>\n",
       "      <td>Spiraea pseudosalicifolia</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>3026444</td>\n",
       "      <td>Spiraea ×pseudosalicifolia Silverside</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>147</th>\n",
       "      <td>155</td>\n",
       "      <td>Tamias sibiricus</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>2437450</td>\n",
       "      <td>Tamias (Eutamias) sibiricus (Laxmann, 1769)</td>\n",
       "      <td>Tamias sibiricus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2437450</td>\n",
       "      <td>Tamias (Eutamias) sibiricus (Laxmann, 1769)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>148</th>\n",
       "      <td>156</td>\n",
       "      <td>Threskiornis aethiopicus</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>2480764</td>\n",
       "      <td>Threskiornis aethiopicus (Latham, 1790)</td>\n",
       "      <td>Threskiornis aethiopicus</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2480764</td>\n",
       "      <td>Threskiornis aethiopicus (Latham, 1790)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>149</th>\n",
       "      <td>157</td>\n",
       "      <td>Trachemys scripta</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>2443002</td>\n",
       "      <td>Trachemys scripta Schoepff, 1792</td>\n",
       "      <td>Trachemys scripta</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>99</td>\n",
       "      <td>2443002</td>\n",
       "      <td>Trachemys scripta Schoepff, 1792</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>150</th>\n",
       "      <td>158</td>\n",
       "      <td>Vallisneria spiralis</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>2865526</td>\n",
       "      <td>Vallisneria spiralis L.</td>\n",
       "      <td>Vallisneria spiralis</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>2865526</td>\n",
       "      <td>Vallisneria spiralis L.</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>151</th>\n",
       "      <td>159</td>\n",
       "      <td>Vespa velutina</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>listed</td>\n",
       "      <td>1311477</td>\n",
       "      <td>Vespa velutina Lepeletier, 1836</td>\n",
       "      <td>Vespa velutina</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>1311477</td>\n",
       "      <td>Vespa velutina Lepeletier, 1836</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>152 rows × 13 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "    index                              name    kingdom      euConcernStatus  \\\n",
       "0       0                      Acer negundo    Plantae  under consideration   \n",
       "1       1              Alopochen aegyptiaca   Animalia  under consideration   \n",
       "2       2       Alternanthera philoxeroides    Plantae  under consideration   \n",
       "3       3                    Ameiurus melas   Animalia  under consideration   \n",
       "4       4                 Asclepias syriaca    Plantae  under consideration   \n",
       "5       5           Symphyotrichum salignum    Plantae                  NaN   \n",
       "6       6             Baccharis halimifolia    Plantae               listed   \n",
       "7       7                       Bison bison   Animalia  under consideration   \n",
       "8       8               Cabomba caroliniana    Plantae               listed   \n",
       "9       9           Callosciurus erythraeus   Animalia               listed   \n",
       "10     10                   Caprella mutica   Animalia           not listed   \n",
       "11     11                 Castor canadensis   Animalia                  NaN   \n",
       "12     12             Celastrus orbiculatus    Plantae                  NaN   \n",
       "13     13                  Corvus splendens   Animalia               listed   \n",
       "14     14              Cotoneaster ambiguus    Plantae                  NaN   \n",
       "15     15             Cotoneaster ascendens    Plantae                  NaN   \n",
       "16     16             Cotoneaster boisianus    Plantae                  NaN   \n",
       "17     17              Cotoneaster bullatus    Plantae                  NaN   \n",
       "18     18            Cotoneaster conspicuus    Plantae                  NaN   \n",
       "19     19             Cotoneaster coriaceus    Plantae                  NaN   \n",
       "20     20               Cotoneaster dammeri    Plantae                  NaN   \n",
       "21     21            Cotoneaster dielsianus    Plantae                  NaN   \n",
       "22     22           Cotoneaster divaricatus    Plantae                  NaN   \n",
       "23     23             Cotoneaster fangianus    Plantae                  NaN   \n",
       "24     24            Cotoneaster franchetii    Plantae                  NaN   \n",
       "25     25         Cotoneaster ganghobaensis    Plantae                  NaN   \n",
       "26     26          Cotoneaster hjelmqvistii    Plantae                  NaN   \n",
       "27     27          Cotoneaster horizontalis    Plantae                  NaN   \n",
       "28     28               Cotoneaster hylmoei    Plantae                  NaN   \n",
       "29     29         Cotoneaster integrifolius    Plantae                  NaN   \n",
       "..    ...                               ...        ...                  ...   \n",
       "122   129       Parthenocissus quinquefolia    Plantae                  NaN   \n",
       "123   131       Parthenocissus tricuspidata    Plantae                  NaN   \n",
       "124   132               Pennisetum setaceum    Plantae  under consideration   \n",
       "125   133                 Perccottus glenii   Animalia               listed   \n",
       "126   134             Persicaria perfoliata    Plantae               listed   \n",
       "127   135                Pontederia cordata    Plantae                  NaN   \n",
       "128   136               Procambarus clarkii   Animalia               listed   \n",
       "129   137  Procambarus fallax f. virginalis   Animalia               listed   \n",
       "130   138                     Procyon lotor   Animalia               listed   \n",
       "131   139               Pseudorasbora parva   Animalia               listed   \n",
       "132   140                  Pueraria montana    Plantae               listed   \n",
       "133   141                     Rapana venosa   Animalia           not listed   \n",
       "134   142              Sagittaria latifolia    Plantae                  NaN   \n",
       "135   143               Sarracenia purpurea    Plantae                  NaN   \n",
       "136   144                 Sargassum muticum  Eukaryota           not listed   \n",
       "137   145              Sciurus carolinensis   Animalia               listed   \n",
       "138   146                     Sciurus niger   Animalia               listed   \n",
       "139   147                  Sicyos angulatus    Plantae           not listed   \n",
       "140   148             Solanum eleagnifolium    Plantae           not listed   \n",
       "141   149             Euthamia graminifolia    Plantae    under preparation   \n",
       "142   150                Spartina pectinata    Plantae                  NaN   \n",
       "143   151               Spartina townsendii    Plantae                  NaN   \n",
       "144   152               Spiraea salicifolia    Plantae                  NaN   \n",
       "145   153                 Spiraea tomentosa    Plantae    under preparation   \n",
       "146   154         Spiraea pseudosalicifolia    Plantae                  NaN   \n",
       "147   155                  Tamias sibiricus   Animalia               listed   \n",
       "148   156          Threskiornis aethiopicus   Animalia               listed   \n",
       "149   157                 Trachemys scripta   Animalia               listed   \n",
       "150   158              Vallisneria spiralis    Plantae                  NaN   \n",
       "151   159                    Vespa velutina   Animalia               listed   \n",
       "\n",
       "    gbifapi_usageKey                             gbifapi_scientificName  \\\n",
       "0            3189866                                    Acer negundo L.   \n",
       "1            2498252              Alopochen aegyptiaca (Linnaeus, 1766)   \n",
       "2            3084923        Alternanthera philoxeroides (Mart.) Griseb.   \n",
       "3            2340977                  Ameiurus melas (Rafinesque, 1820)   \n",
       "4            3170247                               Asclepias syriaca L.   \n",
       "5            3151811         Symphyotrichum salignum (Willd.) G.L.Nesom   \n",
       "6                NaN                                                NaN   \n",
       "7            2441176                       Bison bison (Linnaeus, 1758)   \n",
       "8            2882443                        Cabomba caroliniana A. Gray   \n",
       "9            2437394             Callosciurus erythraeus (Pallas, 1779)   \n",
       "10           5178057                      Caprella mutica Schurin, 1935   \n",
       "11           2439838                       Castor canadensis Kuhl, 1820   \n",
       "12           8104460   Celastrus orbiculatus C.P. Thunberg ex A. Murray   \n",
       "13           2482499                    Corvus splendens Vieillot, 1817   \n",
       "14           3025858           Cotoneaster ambiguus Rehd. & E.H. Wilson   \n",
       "15           3026024            Cotoneaster ascendens Flinck & B. Hylmö   \n",
       "16           3026167                     Cotoneaster boisianus G. Klotz   \n",
       "17           3026294          Cotoneaster bullatus Bois in Bilm. & Bois   \n",
       "18           3025875  Cotoneaster conspicuus H. F. Comber ex C. Marq...   \n",
       "19           3026035                      Cotoneaster coriaceus Franch.   \n",
       "20           3026049                  Cotoneaster dammeri C.K. Schneid.   \n",
       "21           3025896                   Cotoneaster dielsianus E. Pritz.   \n",
       "22           3026334        Cotoneaster divaricatus Rehd. & E.H. Wilson   \n",
       "23           3025932                      Cotoneaster fangianus T.T. Yu   \n",
       "24           3026162                      Cotoneaster franchetii Boiss.   \n",
       "25           3025989      Cotoneaster ganghobaensis J. Fryer & B. Hylmö   \n",
       "26           3026092    Cotoneaster hjelmqvistii K.E. Flinck & B. Hylmö   \n",
       "27           3025617                     Cotoneaster horizontalis Decne   \n",
       "28           3025758         Cotoneaster hylmoei K.E. Flinck & J. Fryer   \n",
       "29               NaN                                                NaN   \n",
       "..               ...                                                ...   \n",
       "122          3039194          Parthenocissus quinquefolia (L.) Planchon   \n",
       "123          3039209  Parthenocissus tricuspidata (Siebold & Zucc.) ...   \n",
       "124          2706134               Pennisetum setaceum (Forssk.) Chiov.   \n",
       "125          2390064                   Perccottus glenii Dybowski, 1877   \n",
       "126          4033648                Persicaria perfoliata (L.) H. Gross   \n",
       "127          2766030                              Pontederia cordata L.   \n",
       "128          2227300  Procambarus (Scapulicambarus) clarkii (Girard,...   \n",
       "129              NaN                                                NaN   \n",
       "130          5218786                     Procyon lotor (Linnaeus, 1758)   \n",
       "131          2362868    Pseudorasbora parva (Temminck & Schlegel, 1846)   \n",
       "132          2977636                      Pueraria montana (Lour.)Merr.   \n",
       "133          4363583                 Rapana venosa (Valenciennes, 1846)   \n",
       "134          5328909                        Sagittaria latifolia Willd.   \n",
       "135          5421389                             Sarracenia purpurea L.   \n",
       "136          3197314           Sargassum muticum (Yendo) Fensholt, 1955   \n",
       "137          5219681        Sciurus (Sciurus) carolinensis Gmelin, 1788   \n",
       "138          5219683             Sciurus (Sciurus) niger Linnaeus, 1758   \n",
       "139          2874655                                Sicyos angulatus L.   \n",
       "140          7299960                              Solanum eleagnifolium   \n",
       "141          3092782                   Euthamia graminifolia (L.) Nutt.   \n",
       "142          5290030                    Spartina pectinata Bosc ex Link   \n",
       "143          5290034            Spartina townsendii H.Groves & J.Groves   \n",
       "144          3026454                             Spiraea salicifolia L.   \n",
       "145          3026819                               Spiraea tomentosa L.   \n",
       "146          3026444              Spiraea ×pseudosalicifolia Silverside   \n",
       "147          2437450        Tamias (Eutamias) sibiricus (Laxmann, 1769)   \n",
       "148          2480764            Threskiornis aethiopicus (Latham, 1790)   \n",
       "149          2443002                   Trachemys scripta Schoepff, 1792   \n",
       "150          2865526                            Vallisneria spiralis L.   \n",
       "151          1311477                    Vespa velutina Lepeletier, 1836   \n",
       "\n",
       "           gbifapi_canonicalName gbifapi_status gbifapi_rank  \\\n",
       "0                   Acer negundo       ACCEPTED      SPECIES   \n",
       "1           Alopochen aegyptiaca       ACCEPTED      SPECIES   \n",
       "2    Alternanthera philoxeroides       ACCEPTED      SPECIES   \n",
       "3                 Ameiurus melas       ACCEPTED      SPECIES   \n",
       "4              Asclepias syriaca       ACCEPTED      SPECIES   \n",
       "5        Symphyotrichum salignum       DOUBTFUL      SPECIES   \n",
       "6                            NaN            NaN          NaN   \n",
       "7                    Bison bison       ACCEPTED      SPECIES   \n",
       "8            Cabomba caroliniana       ACCEPTED      SPECIES   \n",
       "9        Callosciurus erythraeus       ACCEPTED      SPECIES   \n",
       "10               Caprella mutica       ACCEPTED      SPECIES   \n",
       "11             Castor canadensis       ACCEPTED      SPECIES   \n",
       "12         Celastrus orbiculatus       ACCEPTED      SPECIES   \n",
       "13              Corvus splendens       ACCEPTED      SPECIES   \n",
       "14          Cotoneaster ambiguus       ACCEPTED      SPECIES   \n",
       "15         Cotoneaster ascendens       ACCEPTED      SPECIES   \n",
       "16         Cotoneaster boisianus        SYNONYM      SPECIES   \n",
       "17          Cotoneaster bullatus       ACCEPTED      SPECIES   \n",
       "18        Cotoneaster conspicuus       ACCEPTED      SPECIES   \n",
       "19         Cotoneaster coriaceus       ACCEPTED      SPECIES   \n",
       "20           Cotoneaster dammeri       ACCEPTED      SPECIES   \n",
       "21        Cotoneaster dielsianus       ACCEPTED      SPECIES   \n",
       "22       Cotoneaster divaricatus       ACCEPTED      SPECIES   \n",
       "23         Cotoneaster fangianus       ACCEPTED      SPECIES   \n",
       "24        Cotoneaster franchetii       ACCEPTED      SPECIES   \n",
       "25     Cotoneaster ganghobaensis        SYNONYM      SPECIES   \n",
       "26      Cotoneaster hjelmqvistii       ACCEPTED      SPECIES   \n",
       "27      Cotoneaster horizontalis       ACCEPTED      SPECIES   \n",
       "28           Cotoneaster hylmoei        SYNONYM      SPECIES   \n",
       "29                           NaN            NaN          NaN   \n",
       "..                           ...            ...          ...   \n",
       "122  Parthenocissus quinquefolia       ACCEPTED      SPECIES   \n",
       "123  Parthenocissus tricuspidata       ACCEPTED      SPECIES   \n",
       "124          Pennisetum setaceum       ACCEPTED      SPECIES   \n",
       "125            Perccottus glenii       ACCEPTED      SPECIES   \n",
       "126        Persicaria perfoliata        SYNONYM      SPECIES   \n",
       "127           Pontederia cordata       ACCEPTED      SPECIES   \n",
       "128          Procambarus clarkii       ACCEPTED      SPECIES   \n",
       "129                          NaN            NaN          NaN   \n",
       "130                Procyon lotor       ACCEPTED      SPECIES   \n",
       "131          Pseudorasbora parva       ACCEPTED      SPECIES   \n",
       "132             Pueraria montana        SYNONYM      SPECIES   \n",
       "133                Rapana venosa       ACCEPTED      SPECIES   \n",
       "134         Sagittaria latifolia       ACCEPTED      SPECIES   \n",
       "135          Sarracenia purpurea       ACCEPTED      SPECIES   \n",
       "136            Sargassum muticum       ACCEPTED      SPECIES   \n",
       "137         Sciurus carolinensis       ACCEPTED      SPECIES   \n",
       "138                Sciurus niger       ACCEPTED      SPECIES   \n",
       "139             Sicyos angulatus       ACCEPTED      SPECIES   \n",
       "140        Solanum eleagnifolium       ACCEPTED      SPECIES   \n",
       "141        Euthamia graminifolia       DOUBTFUL      SPECIES   \n",
       "142           Spartina pectinata       ACCEPTED      SPECIES   \n",
       "143          Spartina townsendii       ACCEPTED      SPECIES   \n",
       "144          Spiraea salicifolia       ACCEPTED      SPECIES   \n",
       "145            Spiraea tomentosa       ACCEPTED      SPECIES   \n",
       "146    Spiraea pseudosalicifolia       ACCEPTED      SPECIES   \n",
       "147             Tamias sibiricus       ACCEPTED      SPECIES   \n",
       "148     Threskiornis aethiopicus       ACCEPTED      SPECIES   \n",
       "149            Trachemys scripta       ACCEPTED      SPECIES   \n",
       "150         Vallisneria spiralis       ACCEPTED      SPECIES   \n",
       "151               Vespa velutina       ACCEPTED      SPECIES   \n",
       "\n",
       "    gbifapi_matchType gbifapi_confidence gbifapi_acceptedKey  \\\n",
       "0               EXACT                100             3189866   \n",
       "1               EXACT                100             2498252   \n",
       "2               EXACT                100             3084923   \n",
       "3               EXACT                100             2340977   \n",
       "4               EXACT                 99             3170247   \n",
       "5               EXACT                100             3151811   \n",
       "6                 NaN                NaN                 NaN   \n",
       "7               EXACT                100             2441176   \n",
       "8               EXACT                100             2882443   \n",
       "9               EXACT                100             2437394   \n",
       "10              EXACT                100             5178057   \n",
       "11              EXACT                100             2439838   \n",
       "12              EXACT                 99             8104460   \n",
       "13              EXACT                100             2482499   \n",
       "14              EXACT                100             3025858   \n",
       "15              EXACT                100             3026024   \n",
       "16              EXACT                100             3026295   \n",
       "17              EXACT                100             3026294   \n",
       "18              EXACT                 99             3025875   \n",
       "19              EXACT                100             3026035   \n",
       "20              EXACT                100             3026049   \n",
       "21              EXACT                 99             3025896   \n",
       "22              EXACT                100             3026334   \n",
       "23              EXACT                100             3025932   \n",
       "24              EXACT                100             3026162   \n",
       "25              EXACT                100             3026007   \n",
       "26              EXACT                100             3026092   \n",
       "27              EXACT                 99             3025617   \n",
       "28              EXACT                100             3026076   \n",
       "29                NaN                NaN                 NaN   \n",
       "..                ...                ...                 ...   \n",
       "122             EXACT                 99             3039194   \n",
       "123             EXACT                100             3039209   \n",
       "124             EXACT                100             2706134   \n",
       "125             EXACT                100             2390064   \n",
       "126             EXACT                100             4037171   \n",
       "127             EXACT                100             2766030   \n",
       "128             EXACT                100             2227300   \n",
       "129               NaN                NaN                 NaN   \n",
       "130             EXACT                100             5218786   \n",
       "131             EXACT                100             2362868   \n",
       "132             EXACT                100             5352354   \n",
       "133             EXACT                100             4363583   \n",
       "134             EXACT                100             5328909   \n",
       "135             EXACT                 99             5421389   \n",
       "136             EXACT                 95             3197314   \n",
       "137             EXACT                100             5219681   \n",
       "138             EXACT                100             5219683   \n",
       "139             EXACT                 99             2874655   \n",
       "140             EXACT                100             7299960   \n",
       "141             EXACT                 97             3092782   \n",
       "142             EXACT                100             5290030   \n",
       "143             EXACT                100             5290034   \n",
       "144             EXACT                 99             3026454   \n",
       "145             EXACT                 99             3026819   \n",
       "146             EXACT                100             3026444   \n",
       "147             EXACT                100             2437450   \n",
       "148             EXACT                100             2480764   \n",
       "149             EXACT                 99             2443002   \n",
       "150             EXACT                100             2865526   \n",
       "151             EXACT                100             1311477   \n",
       "\n",
       "                        gbifapi_acceptedScientificName  \n",
       "0                                      Acer negundo L.  \n",
       "1                Alopochen aegyptiaca (Linnaeus, 1766)  \n",
       "2          Alternanthera philoxeroides (Mart.) Griseb.  \n",
       "3                    Ameiurus melas (Rafinesque, 1820)  \n",
       "4                                 Asclepias syriaca L.  \n",
       "5           Symphyotrichum salignum (Willd.) G.L.Nesom  \n",
       "6                                                  NaN  \n",
       "7                         Bison bison (Linnaeus, 1758)  \n",
       "8                          Cabomba caroliniana A. Gray  \n",
       "9               Callosciurus erythraeus (Pallas, 1779)  \n",
       "10                       Caprella mutica Schurin, 1935  \n",
       "11                        Castor canadensis Kuhl, 1820  \n",
       "12    Celastrus orbiculatus C.P. Thunberg ex A. Murray  \n",
       "13                     Corvus splendens Vieillot, 1817  \n",
       "14            Cotoneaster ambiguus Rehd. & E.H. Wilson  \n",
       "15             Cotoneaster ascendens Flinck & B. Hylmö  \n",
       "16   Cotoneaster bullatus var. floribundus (Stapf) ...  \n",
       "17           Cotoneaster bullatus Bois in Bilm. & Bois  \n",
       "18   Cotoneaster conspicuus H. F. Comber ex C. Marq...  \n",
       "19                       Cotoneaster coriaceus Franch.  \n",
       "20                   Cotoneaster dammeri C.K. Schneid.  \n",
       "21                    Cotoneaster dielsianus E. Pritz.  \n",
       "22         Cotoneaster divaricatus Rehd. & E.H. Wilson  \n",
       "23                       Cotoneaster fangianus T.T. Yu  \n",
       "24                       Cotoneaster franchetii Boiss.  \n",
       "25                      Cotoneaster lambertii G. Klotz  \n",
       "26     Cotoneaster hjelmqvistii K.E. Flinck & B. Hylmö  \n",
       "27                      Cotoneaster horizontalis Decne  \n",
       "28   Cotoneaster salicifolius var. rugosus (E. Prit...  \n",
       "29                                                 NaN  \n",
       "..                                                 ...  \n",
       "122          Parthenocissus quinquefolia (L.) Planchon  \n",
       "123  Parthenocissus tricuspidata (Siebold & Zucc.) ...  \n",
       "124               Pennisetum setaceum (Forssk.) Chiov.  \n",
       "125                   Perccottus glenii Dybowski, 1877  \n",
       "126                    Truellum perfoliatum (L.) Soják  \n",
       "127                              Pontederia cordata L.  \n",
       "128  Procambarus (Scapulicambarus) clarkii (Girard,...  \n",
       "129                                                NaN  \n",
       "130                     Procyon lotor (Linnaeus, 1758)  \n",
       "131    Pseudorasbora parva (Temminck & Schlegel, 1846)  \n",
       "132                               Anthyllis montana L.  \n",
       "133                 Rapana venosa (Valenciennes, 1846)  \n",
       "134                        Sagittaria latifolia Willd.  \n",
       "135                             Sarracenia purpurea L.  \n",
       "136           Sargassum muticum (Yendo) Fensholt, 1955  \n",
       "137        Sciurus (Sciurus) carolinensis Gmelin, 1788  \n",
       "138             Sciurus (Sciurus) niger Linnaeus, 1758  \n",
       "139                                Sicyos angulatus L.  \n",
       "140                              Solanum eleagnifolium  \n",
       "141                   Euthamia graminifolia (L.) Nutt.  \n",
       "142                    Spartina pectinata Bosc ex Link  \n",
       "143            Spartina townsendii H.Groves & J.Groves  \n",
       "144                             Spiraea salicifolia L.  \n",
       "145                               Spiraea tomentosa L.  \n",
       "146              Spiraea ×pseudosalicifolia Silverside  \n",
       "147        Tamias (Eutamias) sibiricus (Laxmann, 1769)  \n",
       "148            Threskiornis aethiopicus (Latham, 1790)  \n",
       "149                   Trachemys scripta Schoepff, 1792  \n",
       "150                            Vallisneria spiralis L.  \n",
       "151                    Vespa velutina Lepeletier, 1836  \n",
       "\n",
       "[152 rows x 13 columns]"
      ]
     },
     "execution_count": 443,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 444,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
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       "  <thead>\n",
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       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>nbnTaxonID</th>\n",
       "      <th>NBN_status</th>\n",
       "      <th>NBN_confidence</th>\n",
       "      <th>NBN_scientificName</th>\n",
       "      <th>NBN_taxon_group_info</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3189866</td>\n",
       "      <td>Acer negundo L.</td>\n",
       "      <td>NBNSYS0000014604</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Acer negundo</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>Alopochen aegyptiaca</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2498252</td>\n",
       "      <td>Alopochen aegyptiaca (Linnaeus, 1766)</td>\n",
       "      <td>NHMSYS0001689380</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>100</td>\n",
       "      <td>Alopochen aegyptiacus</td>\n",
       "      <td>vogel</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>Alternanthera philoxeroides</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3084923</td>\n",
       "      <td>Alternanthera philoxeroides (Mart.) Griseb.</td>\n",
       "      <td>nan</td>\n",
       "      <td>nan</td>\n",
       "      <td>nan</td>\n",
       "      <td>nan</td>\n",
       "      <td>nan</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>Animalia</td>\n",
       "      <td>2340977</td>\n",
       "      <td>Ameiurus melas (Rafinesque, 1820)</td>\n",
       "      <td>NHMSYS0000544615</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>100</td>\n",
       "      <td>Ameiurus melas</td>\n",
       "      <td>beenvis (Actinopterygii)</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>3170247</td>\n",
       "      <td>Asclepias syriaca L.</td>\n",
       "      <td>INBSYS0000005932</td>\n",
       "      <td>ACCEPTED</td>\n",
       "      <td>99</td>\n",
       "      <td>Asclepias syriaca</td>\n",
       "      <td>bloemplant</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                          name   kingdom gbifapi_acceptedKey  \\\n",
       "0                 Acer negundo   Plantae             3189866   \n",
       "1         Alopochen aegyptiaca  Animalia             2498252   \n",
       "2  Alternanthera philoxeroides   Plantae             3084923   \n",
       "3               Ameiurus melas  Animalia             2340977   \n",
       "4            Asclepias syriaca   Plantae             3170247   \n",
       "\n",
       "                gbifapi_acceptedScientificName        nbnTaxonID NBN_status  \\\n",
       "0                              Acer negundo L.  NBNSYS0000014604   ACCEPTED   \n",
       "1        Alopochen aegyptiaca (Linnaeus, 1766)  NHMSYS0001689380    SYNONYM   \n",
       "2  Alternanthera philoxeroides (Mart.) Griseb.               nan        nan   \n",
       "3            Ameiurus melas (Rafinesque, 1820)  NHMSYS0000544615   ACCEPTED   \n",
       "4                         Asclepias syriaca L.  INBSYS0000005932   ACCEPTED   \n",
       "\n",
       "  NBN_confidence     NBN_scientificName      NBN_taxon_group_info  \n",
       "0            100           Acer negundo                bloemplant  \n",
       "1            100  Alopochen aegyptiacus                     vogel  \n",
       "2            nan                    nan                       nan  \n",
       "3            100         Ameiurus melas  beenvis (Actinopterygii)  \n",
       "4             99      Asclepias syriaca                bloemplant  "
      ]
     },
     "execution_count": 444,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "grouped_species_list.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 451,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "invasive_species_update = pd.merge(invasive_species.drop(\"nbnTaxonID\", axis=1), \n",
    "                                   grouped_species_list[[\"name\", \n",
    "                                                         \"nbnTaxonID\",\n",
    "                                                         \"NBN_scientificName\"]], \n",
    "                                   on='name')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 466,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "invasive_species_update = invasive_species_update.drop(\"index\", axis=1)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 473,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "invasive_species_update = invasive_species_update.replace(\"nan\", np.nan)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 474,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "invasive_species_update.to_csv(\"species_list.tsv\", index=False, sep='\\t', na_rep=\"\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 475,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>name</th>\n",
       "      <th>kingdom</th>\n",
       "      <th>euConcernStatus</th>\n",
       "      <th>gbifapi_usageKey</th>\n",
       "      <th>gbifapi_scientificName</th>\n",
       "      <th>gbifapi_canonicalName</th>\n",
       "      <th>gbifapi_status</th>\n",
       "      <th>gbifapi_rank</th>\n",
       "      <th>gbifapi_matchType</th>\n",
       "      <th>gbifapi_confidence</th>\n",
       "      <th>gbifapi_acceptedKey</th>\n",
       "      <th>gbifapi_acceptedScientificName</th>\n",
       "      <th>nbnTaxonID</th>\n",
       "      <th>NBN_scientificName</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>107</th>\n",
       "      <td>Oenothera rubricalyx</td>\n",
       "      <td>Plantae</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3665866</td>\n",
       "      <td>Oenothera rubricalyx R.R.Gates</td>\n",
       "      <td>Oenothera rubricalyx</td>\n",
       "      <td>SYNONYM</td>\n",
       "      <td>SPECIES</td>\n",
       "      <td>EXACT</td>\n",
       "      <td>100</td>\n",
       "      <td>7322738</td>\n",
       "      <td>Oenothera perangusta Gates</td>\n",
       "      <td>NBNSYS0000013948</td>\n",
       "      <td>Oenothera perangusta</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                     name  kingdom euConcernStatus gbifapi_usageKey  \\\n",
       "107  Oenothera rubricalyx  Plantae             NaN          3665866   \n",
       "\n",
       "             gbifapi_scientificName gbifapi_canonicalName gbifapi_status  \\\n",
       "107  Oenothera rubricalyx R.R.Gates  Oenothera rubricalyx        SYNONYM   \n",
       "\n",
       "    gbifapi_rank gbifapi_matchType gbifapi_confidence gbifapi_acceptedKey  \\\n",
       "107      SPECIES             EXACT                100             7322738   \n",
       "\n",
       "    gbifapi_acceptedScientificName        nbnTaxonID    NBN_scientificName  \n",
       "107     Oenothera perangusta Gates  NBNSYS0000013948  Oenothera perangusta  "
      ]
     },
     "execution_count": 475,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "invasive_species_update[invasive_species_update[\"name\"] == \"Oenothera rubricalyx\"]"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### The issue of Hyacinthoides hispanica"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_names[recorder_names[\"scientificName\"].str.contains(\"Hyacinthoides hispanica\")]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "recorder_matched[recorder_matched[\"NBN_index\"] == \"INBSYS0000004090\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "extract_gbif_species_names_info(\"Hyacinthoides hispanica\", \"Plantae\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "occ_hyacinth = pd.read_csv(\"occurrences_Hyacinthoides_hispanica.csv\", delimiter='\\t')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "occ_hyacinth.groupby(\"ITEM_NAME\").count().index"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
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