TBProfiler v3.0.6

Changes

• Fix lofreq vcf bug
• Add candidate drugs to other variants (#166)
• Speed up lineage profiling

TBProfiler v3.0.5

Changes

• Fix VCF error logging bug (e7a9a8d)

TBProfiler v3.0.4

Updates

• Added --call_whole_genome to call variants on whole genome (#109, #146)

TBProfiler v3.0.3

Minor release

• Fix for #134

TBProfiler v3.0.2

Minor release

• Fix for #143

TBProfiler v3.0.1

Minor release

• Fix for bug with text format output
• Fix for #142

TBProfiler v3.0.0

TB-Profiler v3

Important

This release is incompatible with the input database and json result files of earlier versions

New features

• Removal of soft clipped reads before variant calling
• Support for bwa-mem2
• Fixed and updated pdf output (#138)
• Improved error logging
• Cleanup of files on error (#131)

Fixes

• Proper handling of start_lost variants (#139)

TBProfiler v2.8.14

Changes

• Add compatibility with lofreq vcf format

TBProfiler v2.8.13

Changes

• Added freebayes as an option for lineage SNP calling
• Fix for #126

TBProfiler v2.8.12

Changes

• Fix for #121