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Add example gene set for each species #21

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ChristopherMancuso opened this issue Apr 11, 2024 · 5 comments
Open

Add example gene set for each species #21

ChristopherMancuso opened this issue Apr 11, 2024 · 5 comments
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@ChristopherMancuso
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For the step that validates the genes, need to have a gene set that is specific to the species chosen.

  • (Chris) Make species specific example gene sets
  • (Vince) Add that function to UI
@vincerubinetti
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If you want I can just pick random ones from mygeneset.info that are around 10 genes. That's what I did for the current example jeans.

In my next PR I'll probably do that, at least temporarily until you pick more significant/interesting examples if you want.

@ChristopherMancuso
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that would be great to just grab those from mygeneset.info. I probably will find sets that have really interesting biology at some point, but that will be done after more fixing of the python package happens.

@ChristopherMancuso
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ChristopherMancuso commented Sep 5, 2024

Arjun provided a possible example in the google doc
bbs genes

@vincerubinetti
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I just pushed those bbs genes to #38 as new human example genes. (I believe they're human, from googling)

@ChristopherMancuso
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sounds good. For the example gene sets I am going to try to find a single biological process that is well annotated in each species so when explaining the results I don't have to learn vastly different biology for each species. On your end I don't think this changes much as I can just point you to those gene sets once I get them, but since we need a walkthrough/tutorial for the NAR submission I think the example gene sets need to be pretty similar to help me out on that.

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