environment.yml

name: orthomap_env
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - python=3.8
  - setuptools>=67.5.1
  - numpy<1.24
  - numba
  - scipy
  - pandas>=1.5.1
  - ete3
  - anndata
  - scanpy>=1.9.3
  - seaborn
  - statannot
  - alive-progress
  - biopython
  - python-wget>=3.2
  - pytest
  - pip
  - pip:
      - harmonypy>=0.0.9
      - louvain>=0.8.0
      - umap-learn>=0.5.3