Can't access /data/sacgf/microbio/lleong/commands/

[tseemann]

You have helper scripts in /data/sacgf/microbio/lleong/commands/

These should be in the github repo?

[lexleong]

Yes. The helper scripts should be in this github site. I have modified the Snakefile, you might need to make those helper scripts executable.

[tseemann]

You'll need to add the helper scripts to github (don't forget to 'git push`)

[lexleong]

Hmm. I might be sounding very amature here (which I am! :P). But the helper script compile_seq_data.sh is in the lexleong/eyre dir