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README.Rmd
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---
output: github_document
---
[![DOI](https://zenodo.org/badge/141162079.svg)](https://zenodo.org/badge/latestdoi/141162079)
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r setup, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
```
# SGCCA hyperparameters
The goal of SGCCA_hyperparameters is to evaluate the influence of the hyperparameters tau, and weight in the Sparse Generalized Canonical Correlation Analysis
The 014850_D_GeneList20070207.txt file was downloaded from [Agilent](https://www.chem.agilent.com/cag/bsp/gene_lists.asp) on 2018/07/18 from [here](https://www.chem.agilent.com/cag/bsp/oligoGL/014850_D_GeneList_20070207.txt.zip), uncompressed and stored for mapping the ids of the genes with the names of the proteins.
The original data is stored [here](https://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-1107/) with the annotation for each microarray.
(the downloaded file and the original in ebi seem to match after randomly checking some GE identifiers)