Chronological changes to scikick are summarized below.
- Add support for new snakemake versions requiring wildcards in benchmark
- Benchmark directory now created by default under
report/benchmark
- Project Maps - embed the scikick workflow into each page as a graph with nodes linking to pages
- Added experimental support for
.ipynb - Website menus are processed to be more human readable (#1)
- Individual page log files stored in report/logs
- Allow for global rmarkdown/pandoc yaml in scikick.yml
- Dump full logs after snakemake error
- Add
sk run --quietargument - Include the default homepage in sk status
- Remove internal custom CSS for rmarkdown::html_document
- Snakemake requirement bumped to >= 5.9 due to use of custom logger
- New sk status message (detect unknown execution reasons)
- Fix issue #2 for sk add -d usage
- More checks for scikick.yml state (e.g. sk version in use)
- Minor changes to footer/homepage content (include scikick.yml)
- Reduce outputs in sk init and other
- New sk init template
- Fix conda env usage with
sk config --condaandsk run -s --use-conda
- Allow for convenient single page runs with
sk run my.Rmdusage - Single page status usage as
sk status my.Rmd - Add
--copy-depstosk addfor duplicating file dependencies - Index page is now defined by user with
sk add <path to index file>instead of auto-detected - Add git SHA to site git logs
- Many sk status adjustments
- More detailed
sk add -doutput - Better outputs for errors and warnings during
sk run - Tested and fixed renv compatibility
- Default index page is appended to any added index page
- Requirement of git2r version >= 0.27.1
- Fix git warnings and other outputs
- Add checks for scikick.yml format
- Other bug fixes
- Initial release