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Justfile
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Justfile
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set dotenv-load := true
test-units:
cargo test --lib --features nalgebra,parallelism,mzsignal,zlib-ng-compat,thermo
alias t := test-units
test-units-more:
cargo test --lib --features nalgebra,parallelism,mzsignal,zlib-ng-compat,thermo,async
quick-docs:
cargo doc --no-deps -p mzdata
docs:
cargo doc --no-deps --features nalgebra,parallelism,mzsignal,mzmlb,zlib-ng-compat,thermo,async -p mzdata
install-mzdata:
cargo install --path . --features nalgebra,parallelism,mzsignal,mzmlb,zlib-ng-compat,hdf5_static
update-cv:
curl --insecure \
--location \
https://github.com/HUPO-PSI/psi-ms-CV/releases/latest/download/psi-ms.obo | gzip -c > cv/psi-ms.obo.gz
gzip -d -c cv/psi-ms.obo.gz | head -n 5
update-cv-terms:
cog -c -r -U src/meta/software.rs src/meta/instrument.rs src/meta/file_description.rs src/io/mzml/writer.rs src/meta/activation.rs
changelog version:
#!/usr/bin/env python
import subprocess
import re
new_content = subprocess.check_output(['git', 'cliff', '-s', 'all', '-u', '-t', '{{version}}'], stderr=subprocess.DEVNULL).decode()
new_version = "{{version}}"
buffer = open('CHANGELOG.md').read()
buffer = buffer.replace("## ", f"{new_content}## ", 1).splitlines()
offset = buffer.index("<!-- Versions -->") + 1
line_to_patch = buffer[offset + 1]
previous_version = re.search(r"(v\d+\.\d+\.\d+[^\.]*)", line_to_patch).group(1)
buffer[offset] = re.sub(r"v\d+\.\d+\.\d+[^\.]*", new_version, line_to_patch)
version_link_template = buffer[offset + 2]
version_link_template = re.sub(
r"\d+\.\d+\.\d+[^\.]*(?=\])", new_version[1:], version_link_template
)
version_link_template = version_link_template.rsplit("/", 1)[0] + f"/{previous_version}...{new_version}"
buffer[offset + 1] = version_link_template
buffer.insert(offset, '')
buffer = '\n'.join(buffer)
open('CHANGELOG.md', 'wt').write(buffer)
print(buffer)
release tag: (changelog tag)
git add CHANGELOG.md
git commit -m "chore: update changelog"
git tag {{tag}}
cargo publish