-
Notifications
You must be signed in to change notification settings - Fork 0
/
setup.cfg
91 lines (79 loc) · 2.38 KB
/
setup.cfg
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
[metadata]
name = napari-kics
version = attr: napari_kics.__version__
author = Alexandr Dibrov
author_email = [email protected]
license = BSD-3-Clause
description = A plugin to estimate chromosome sizes from karyotype images.
long_description = file: README.md
long_description_content_type = text/markdown
classifiers =
Development Status :: 2 - Pre-Alpha
Intended Audience :: Developers
Framework :: napari
Topic :: Scientific/Engineering :: Image Processing
Topic :: Scientific/Engineering :: Information Analysis
Programming Language :: Python
Programming Language :: Python :: 3
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Operating System :: OS Independent
License :: OSI Approved :: BSD License
[options]
packages = find:
python_requires = >=3.7
# add your package requirements here
install_requires =
napari-plugin-engine>=0.1.4
numpy
napari[all]
scikit-image
pandas
pulp
pyqtgraph
[options.packages.find]
include =
napari_kics
napari_kics.*
exclude =
napari_kics.resources
napari_kics.resources.*
[options.package_data]
napari_kics =
resources/artwork/logo.svg
resources/data/mHomSap_male.fasta.fai
resources/data/mHomSap_male.jpeg
napari_kics.analysis_plots =
resources/data/mMyoMyo.estimates.tsv
resources/data/mMyoMyo.fasta.fai
[options.entry_points]
napari.plugin =
napari-kics = napari_kics
console_scripts =
karyotype-analysis-plots = napari_kics.analysis_plots.__main__:main
[isort]
multi_line_output=3
include_trailing_comma=True
force_grid_wrap=0
use_parentheses=True
line_length=88
[flake8]
ignore =
# W503 line break before binary operator (contradicts with black)
# E203 whitespace before ‘,’, ‘;’, or ‘:’ (contradicts with black)
W503,E203
exclude = .git,__pycache__,dist,docs
per-file-ignores =
# F401 imported but unused (imports are just forwarded)
# F403 unable to detect undefined names (init files should not require this check)
__init__.py: F401,F403
# F405 may be undefined (there is some magic happening that's breaking things; just ignore it)
# F821 undefined name (injecting globals into functions break this check)
workflow.py: F405,F821
max-line-length = 88
max-complexity = 18
select = B,C,E,F,W,T4
[tool:pytest]
testpaths=tests
python_files = test_*.py