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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "postprocessing_variant_calls"
version = "0.3.0"
description = "This hosts multiple scripts necessary for filtering and processing of variant calls in the vcfs/txt file generated by callers."
authors = ["Ronak Shah <[email protected]>", "Karthigayini Sivaprakasam <[email protected]>", "Eric Buehler <[email protected]>"]
readme = "README.md" # Markdown files are supported
repository = "https://github.com/msk-access/postprocessing_variant_calls"
homepage = "https://cmo-ci.gitbook.io/postprocessing_variant_calls/"
packages = [
{ include = "utils" },
{ include = "postprocessing_variant_calls" }
]
[tool.poetry.dependencies]
python = ">=3.8"
typer = {extras = ["all"], version = "*"} # "^0.3"
PyVCF3 = "*"
pandas = "*"
numpy = "*"
[tool.poetry.dev-dependencies]
flake8 = "*"
pytest = "*"
typer-cli = "*"
black = "*"
[tool.poetry.scripts]
pv = "postprocessing_variant_calls.main:app"
[build-system]
requires = ["poetry>=1.0.0"]
build-backend = "poetry.masonry.api"