-
Notifications
You must be signed in to change notification settings - Fork 17
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
No pod5 conda package #36
Comments
Hi @JannesSP , We'll look into creating a conda package right away. In the meantime, are you able to install pod5 into a conda environment via Kind regards, |
Hi @HalfPhoton, Yes for now I am able to install pod5 via Kind regards, |
Ok, we'll get this sorted soon and we'll let you know when it's done. Kind regards, |
Hey @HalfPhoton, How far are you with the conda package? Has anything happened there yet? Kind Regards, |
Hi @JannesSP , There's been no progress from us sorry. I've had some issues getting conda to build the package. We'll look into picking this back up to make some progress. |
Hey @HalfPhoton, during the last couple of days I tried to figure out how to build the conda package for 'lib-pod5'. You can see, the packages can be found in my anaconda channel. If you have a look at the bioconda recipe, you will notice, that it looks a bit different. Bioconda enforces special requirements for their recipes. The lib-pod5 recipe already passed the checks there. The bioconda pod5 recipe can be added after the lib-pod5 is accepted, which might take a while. I hope this helps to move forward building conda packages for each upcoming version. |
Historically we have used bioconda to distribute some of our software pacakges. However we are moving away from using bioconda as we cannot control the contents of such packages (there are no proper controls on who can merge recipes). If a bioconda package is accepted it will not be supported by Oxford Nanopore Technologies Plc. |
@cjw85, I understand your problem! This is just an idea: Kind Regards, |
We do have already our own conda channel 😉 |
Ah, I figured. Best, |
@cjw85 Would be great if you could add a recipe for pod5 to it :) |
Might be useful to create environment. name: pod5
dependencies:
|
Yes, this is what I am doing at the moment. But as mentioned earlier in this thread there are advantages to having a recipe available for tools that rely on pod5 |
Hey @mbhall88 , if you want to, you can get pod5 from my channel: https://anaconda.org/JannesSP/pod5. Kind regards, Jannes |
Hi @JannesSP,
I can't find any folder with this name, do I need to install something? they are temp files. |
See: #110 |
Dear pod5 developers,
please consider to create a conda package for pod5.
I tried to create a pod5 recipe from the
pypi pod5
package myself usinggrayskull
, but it fails:It would be super helpful to create a conda pod5 package, as many scientists work with conda.
Kind regards,
Jannes Spangenberg
The text was updated successfully, but these errors were encountered: