- Resolve "custom schema for tabular parser are failing to process" (merge request)
- Resolve "frontend float quantities validation" (merge request)
- Fix normalization of md errors (merge request)
- Resolve "Bugfix: type conversion in PubChemPureSubstanceSection" (merge request)
- Fixed an issue with GUI access check not considering the viewer groups. (merge request)
- Add simulation workflow plugin (merge request)
- Changes the display nexus card logic to the new way a parser is loaded in and... (merge request)
- Remove run submodule (merge request)
- Move visible-for-all checkbox to upload overview (merge request)
- Keycloak js dependency update (merge request)
- Migrate to Python311 (merge request)
- Clean up prerelease python packages (merge request)
- Resolve "Define a template for plots style" (merge request)
- Resolve "Preview plot from CLI parse" (merge request)
- Added new plugin entry point type for example uploads. (merge request)
- Resolve "Output of
QueryEditQuantity" (merge request) - Added a new logarithmic scaling option for histograms and plot axes used in the search interface. (merge request)
- Fixed the type of allowed_users in the config. (merge request)
- Resolve "Section reference dialog filters not resetting" (merge request)
- Removed polyfill.io from the GUI. (merge request)
- Resolve "ASAP parser issue" (merge request)
- Fixed missing horizontal scroll ability on file preview lanes. (merge request)
- Fixed some broken links and missing examples in the docs. (merge request)
- Fixed issue with SI-prefixed units in unit systems. (merge request)
- Resolve "DateEditQuantity and TimeEditQuantity are removed from the app" (merge request)
- Resolve "Some datetime related tests fail at night" (merge request)
- Fixed the visibility on the dataset page to show metadata of embargoed data. (merge request)
- Fixed an url encoding issue in the h5groove integration. (merge request)
- Add label argument in TextFieldWithHelp (merge request)
- Fixed handling of missing definitions for dynamic search quantities. (merge request)
- Fixed a problem in juypterhubconfig that was preventing priveledged services. (merge request)
- Changed that uploads shared with all do not show in a users upload list. (merge request)
- Fixed the used request version to be compatible with current jupyterhub. (merge request)
- Search edit quantity (merge request)
- Added jupyter based admin console to k8s deployments. (merge request)
- Added support for "delta" units that allow comparisons between value ranges... (merge request)
- Added RSM to the
results.XRDMethod(merge request) - Add AI toolkit as a search app. (merge request)
- Added plugin tutorial to docs (merge request)
- Added release documentation. (merge request)
- Merge branch 'migrate-to-openbis' into 'develop' (merge request)
- Update sim workflow schema (merge request)
- Migrated all porosity-related calculations into a separate plugin together with the MOF app. (merge request)
- Moved perovskite solar cell schema and app into a plugin. (merge request)
- Update run schema submodule (merge request)
- Fixed a problem in juypterhubconfig that was preventing priveledged services. (merge request)
- Fixed issue with wrong example_uploads.yaml path. (merge request)
No changes.
- Fix vasp parser (merge request)
- Fixed image tag in docker-compose examples. (merge request)
- Avoid warnings on expected env vars. (merge request)
- Simplified log transfer. (merge request)
- Resolve "Consistent labels in archive browser and ELNs" (merge request)
- Fixed mkdocs search and footer (merge request)
- Fixed integration tests. (merge request)
- Update parser ref (merge request)
- Merge branch... (merge request)
- Fixed the default argument to required on ArchiveQuery. (merge request)
- Fixed the --port argument to admin run app. (merge request)
- Remove global import of datamodel (merge request)
- Fix HDF5 ref docs (merge request)
- Fixed wrong archive version suffix default value. (merge request)
- Resolve "Wrong jupyter upgrade command in docs" (merge request)
- Resolve "Booleans are not displayed on overview page" (merge request)
- Fixed issue with relative paths being used in the filesystem config. (merge request)
- Fixed loglevel config to accept string loglevels. (merge request)
- Fixed the keycloak image registry used by docker-compose example. (merge request)
- Added oasis config to nomad helm chart. (merge request)
- Fixed broken error handling on datacite errors. (merge request)
- Upgraded Jupyterhub. (merge request)
- Resolve "data structure of the .eln file format has changed" (merge request)
- Fixed gui data etag. (merge request)
- Add raw_path_exists method to ClientContext (merge request)
- Fixed issue with file preview using incorrect content length for deciding when to stop streaming. (merge request)
- Resolve "Rendering of SubSection names in Gui" (merge request)
- Added support to serialize schemas with inner section definitions. (merge request)
- Resolve "plotly config dictionary can't be fed in from normalize function" (merge request)
- Fixed backwards compatibility of recent simulation schema changes. (merge request)
- Fixed wrong type on north.enabled config. (merge request)
- Do not lazy load schema plugin (merge request)
- Resolve "tabular parser should set the file name correctly" (merge request)
- Resolve "include and exclude the visible and the editable properties" (merge request)
- Fix quantum espresso parser (merge request)
- Removed
species_at_sitefrom indexed optimade properties. (merge request) - Fixed issue with datetime fields not being updated in the ELN. (merge request)
- Fix assigment of entry domain (merge request)
- Resolve "wrong margin in subplot" (merge request)
- content is missing in Labfolder data element (merge request)
- Resolve "updating Labfolder api" (merge request)
- Fixed
to_stepMethodExperimentStepSection (merge request) - Fixed wrongly abbreviated author list. (merge request)
- Update parser ref (merge request)
- Fixed issue with large keyword values (merge request)
- Resolve "Setting ReferenceEditQuantity to None in normalie" (merge request)
- Resolve "Wrong entry type" (merge request)
- Resolve "Overview page displaying mixed information" (merge request)
- Resolve "Cannot plot a Datetime Quantity" (merge request)
- Add additional ruff check to print linting errors to console (merge request)
- Fixed issue with hashtag not being included in query string (merge request)
- Resolve "View Data in the Archive Button in plots does not work" (merge request)
- Resolve "Some tabular parser modifications to make it more flexible" (merge request)
- Fixed issue with search interface not syncing with URL query string. (merge request)
- Replace the celery-based example data usage with the ExampleData (merge request)
- Resolve "Incorrect unit for geometry optimization final energy difference" (merge request)
- Fixed issue with periodic table not being shown on some older browsers. (merge request)
- Fixed issue with plots not having enough space for title. (merge request)
- Resolve "Deprecated plot annotation" (merge request)
- Fixed wrong dataset URL in EditMetaDataDialog. (merge request)
- Fixed exessively long entry results columns. (merge request)
- Gromacs cleanup (merge request)
- Fixed missing link to download installation files for oasis with keycloak. (merge request)
- Update file parser and parser documentation (merge request)
- Fixed etags produced by fastapi to work with nginx. (merge request)
- Fixes the NOMAD app only running one worker. (merge request)
- Fixed missing cache-control and etags. (merge request)
- Resolve "Consistent labels in archive browser and ELNs" (merge request)
- Changed the config mechanism to delay validation until all data is read,... (merge request)
- Changed the configuration loading logic to support partial updates that are... (merge request)
- Remove submodules from dev dependencies (merge request)
- Remove Perovskite-Solar-Cell-Database files (merge request)
- Moved the .gui_configured folder into a subdirectory of the working directory. (merge request)
- Update parser ref (merge request)
- Update plugin refs (merge request)
- Added config options to disable optional APIs. (merge request)
- Updated the MatID version and increased the MatID clustering size limit. (merge request)
- Merge branch 'fail-format-exit-code-in-ci' into 'develop' (merge request)
- Merge branch 'update-doc-re-linting' into 'develop' (merge request)
- Merge branch 'documentation-for-formatting' into 'develop' (merge request)
- Merge branch 'auto-format' into 'develop' (merge request)
- Merge branch 'add-tabular-description' into 'develop' (merge request)
- Merge branch 'fix-mypy' into 'develop' (merge request)
- Resolve "Include Perovskite Solar Cells Database Pugin" (merge request)
- Resolve "Create entry with custom schema: filter results ordered by EntryId?" (merge request)
- Resolve "DataTextParser inheriting from TextParser" (merge request)
- Added documentation for the new plugin mechanism. (merge request)
- Added new plugin mechanism based on entry points. (merge request)
- Added a new plugin mechanism based on Python entry points. (merge request)
- Resolve "automatic creation and resolution of hdf5 references for large arrays" (merge request)
- Add workflow visualizer docs (merge request)
- Add checkbox to make upload visible for all (merge request)
- Added documentation for downloading files and data with curl. (merge request)
- Added download for published upload .zip file. (merge request)
- Added required parameter to post entry archive download API. (merge request)
- Add functionality to convert archives created with the old writer. (merge request)
- Added possibility to use provide units and labels for scatter plot axes, added... (merge request)
- Introduce common parser class (merge request)
- Resolve "Defaul global unit system" (merge request)
- Added a publish command to the cli. (merge request)
- Converter for json to and from pd dataframe. (merge request)
- Add deprecation note on old run schema (merge request)
- Move run section to plugin (merge request)
- Added support for free-text queries and improved search bar UX. (merge request)
- Added a script to clean up old branches. (merge request)
- Added Possibility to Assign Dimensionless Pint Quantity to Unitless Metainfo Quantity (merge request)
- Add normalizer_level to ArchiveSection to control order of normalization within sub section. (merge request)
- Resolve "Make simulation workflow definition as plug-in" (merge request)
- Resolve "OpenBIS Integration" (merge request)
- Add nomad normalizer example plugin (merge request)
- Added support for querying scalar quantities stored in the nexus section. (merge request)
- Added wrap mode option to the API endpoint for retrieving system geometries. (merge request)
- Added support for controlling unit systems through the configuration file and... (merge request)
- Added an example upload with tutorial and notebook. (merge request)
- Add github commit hash (merge request)
- Added explanation documentation for processing. (merge request)
- Replace pylint with ruff linting (merge request)
- Added MOF App. (merge request)
- Provide possibility to return msection from xpath (merge request)
- Added default widget setup for the "calculations" app. (merge request)
- Add ruff as a linter to replace pycodestyle. (merge request)
- Added the possibility to use custom schemas in apps and search. (merge request)
- Resolve "Workflow for chemical reaction steps" (merge request)
- Added Base Section Workflow Generation (merge request)
- Add support for negative indexing in msection (merge request)
- Resolve "Revising Tabular parser features" (merge request)
- Resolve "Implement ordering of simulation workflow tasks by execution time" (merge request)
- Add parser matching of excel contents (merge request)
- Added metainfo for catalytic properties and an initial app definition for heterogeneous catalysis. (merge request)
- CLI utility to export archive data. (merge request)
- Added Activity ID to ExperiementStep (merge request)
- Added oasis registration link to the docs. (merge request)
- Added authentication for mongo and elastic use. (merge request)
- Added YAML linting plugin for NOMAD schemas. (merge request)
- Added System and PureSubstance components for CompositeSystem, added... (merge request)
- Added better search filters when searching for custom schemas. (merge request)
- Resolve "Refactoring tabular parser" (merge request)
- Update parser (merge request)
- Resolve "ReadableIdentifiers Normalizers Fails" (merge request)
- Fixed the condition for maximum numbers of uploads. (merge request)
- Fixed issue with inconsistent upload status icon usage, added more consistent... (merge request)
- Fixed issues with zero values and redundant API calls in the user defined quantities menu. (merge request)
- Fixed issue when stripping debug symbols from shared object files. (merge request)
- Fixed problem with hardcoded jupyter keycloak realm. (merge request)
- Fixed issue with loading the custom quantities menu. (merge request)
- Fixed issue with reading boolean values from VASP INCAR and OUTCAR files. (merge request)
- Update parser ref (merge request)
- Fixing problem with removing archives generated with tabular parser entry mode (merge request)
- Fixed issue with row action visuals. (merge request)
- Fixed the missing call to generate_docs_artifacts in the setup_dev_env.sh.
- Removed obsolete elk csv to md script. (merge request)
- Command line
--parsernow skips parser matching (merge request) - Improved styling and navigation when browsing nexus files (merge request)
- Improved the handling of dynamically resolved filters in SearchContext. (merge request)
- Changed the coloring and texts in the upload page to make typical upload... (merge request)
- Updated the documentation on mounting plugins within docker. (merge request)
- Refactored periodic table componeng using SVG. (merge request)
- Removed outdated information about using parsers from the parser projects.
- CLI utility to export archive data. (merge request)
- Added Activity ID to ExperiementStep (merge request)
- Added oasis registration link to the docs. (merge request)
- Added authentication for mongo and elastic use. (merge request)
- Added YAML linting plugin for NOMAD schemas. (merge request)
- Added System and PureSubstance components for CompositeSystem, added... (merge request)
- Added better search filters when searching for custom schemas. (merge request)
- Resolve "Refactoring tabular parser" (merge request)
- Added compression suport to quantum expresso mainfiles. (merge request)
- Added a new code contribution guide to the docs. (merge request)
- Added helm config options for plugins and normalize. (merge request)
- Added more documentation on data, schemas, and plugins. (merge request)
- Added new archive config options to helm chart. (merge request)
- Added a soap normalizer normalizer. (merge request)
- Added list of all parsers to the reference documentation. (merge request)
- Added authors column to the processing table (merge request)
- Hight props for RichTextEditor (merge request)
- 1. Foldable list of edit quantities (merge request)
- Added normalizer for analyzing porous systems. (merge request)
- Added new file formats for the API endpoint used for downloading atomistic... (merge request)
- Implement eos fit normalization #1439 (merge request)
- Resolve "Replace workflow with workflow2" (merge request)
- Resolve "Documentation for third party integration" (merge request)
- Add new metainfo
native tiersinrununderelectrons_representationand... (merge request) - Added the functionality to optionally show the section label instead of full path of the reference (merge request)
- Add parser level in interface (merge request)
- Added basic topologies under results.material.topology for all simulation entries. (merge request)
- Added warning when deleting uploads or entries that are referenced (merge request)
- Added basic information, such as mass fraction and atomic fraction, of each element in results. (merge request)
- Added ELN base section for reading and storing structure files. (merge request)
- Added new metainfo for dimensionality and building_block (merge request)
- Added config switch for generating new timestamps. (merge request)
- Added automatic subsystem detection. (merge request)
- Added config option to fallback to a different archive version. (merge request)
- Added new metainfo for storing the level of the XC functional. (merge request)
- Added function m_setdefault for more conveniently storing data inside archives. (merge request)
- Added plugin support for NOMAD Oasis. (merge request)
- Added configurable list of normalizers. (merge request)
- Added plugin base models and schema, parser models. (merge request)
- Update parser (merge request)
- Resolve "ReadableIdentifiers Normalizers Fails" (merge request)
- Fixed the condition for maximum numbers of uploads. (merge request)
- Fixed issue with inconsistent upload status icon usage, added more consistent... (merge request)
- Fixed issues with zero values and redundant API calls in the user defined quantities menu. (merge request)
- Fixed issue when stripping debug symbols from shared object files. (merge request)
- Fixed problem with hardcoded jupyter keycloak realm. (merge request)
- Fixed issue with loading the custom quantities menu. (merge request)
- Fixed issue with reading boolean values from VASP INCAR and OUTCAR files. (merge request)
- Update parser ref (merge request)
- Fixing problem with removing archives generated with tabular parser entry mode (merge request)
- Fixed issue with row action visuals. (merge request)
- Fixed the missing call to generate_docs_artifacts in the setup_dev_env.sh.
- Fixed broken links in the documentation. (merge request)
- Fixed issue with extra_fields in extracted elabFTW
.elnfile (merge request) - Fix some visual problems (merge request)
- The plot axis units should firstly follow the eln.defaultDisplayUnit annotation if exists (merge request)
- Allow uploading multiple files to a list-shaped FileEditQuantity (merge request)
- Cleaning up the method how the version has been determined during the CI/CD build process (merge request)
- Fixed ASE warnings about get_number_of_atoms and the usage of arrays with... (merge request)
- Adjust matching parser regex for new mopac version (merge request)
- Address performance issue in matching parser with child archives (merge request)
- Resolve "Referenced section is not working" (merge request)
- Fixed issue with the conventional cell reported by MatID. (merge request)
- Visually indicate entries with processing errors (merge request)
- Fixed the staging deployment. (merge request)
- Uploads Page, delete button is disabled when selecting all uploads (merge request)
- fix saving files including both definitions and data (merge request)
- Fixed the staging deployment. (merge request)
- Fixed the name of the fhi parser. (merge request)
- Fix creation of d3 elements (merge request)
- Indicate there are multiple co-authors in the upload list. (merge request)
- Only the main author should be allowed to remove an upload (merge request)
- Update parser refs (merge request)
- Various minor fixes (merge request)
- Processing fixes (merge request)
- Remove Duplicated items in archive browser (merge request)
- Fix cp2k, abinit and phonopy parsers (merge request)
- Implement new workflow visualizer (merge request)
- Fix RichText editor style in non editable mode (merge request)
- Fixed javascript error on north page. (merge request)
- Fix the lane computing (merge request)
- Fix a bug in deployment regarding loading North tools (merge request)
- Fix phonopy and lobster parser (merge request)
- Fixed file table in parser about dialog. (merge request)
- Removed obsolete elk csv to md script. (merge request)
- Command line
--parsernow skips parser matching (merge request) - Improved styling and navigation when browsing nexus files (merge request)
- Improved the handling of dynamically resolved filters in SearchContext. (merge request)
- Changed the coloring and texts in the upload page to make typical upload... (merge request)
- Updated the documentation on mounting plugins within docker. (merge request)
- Refactored periodic table componeng using SVG. (merge request)
- Removed outdated information about using parsers from the parser projects.
- Changed dependency versions to increase compatibility. (merge request)
- Changed the version of scikit-learn for better compatibility. (merge request)
- Changed xarray requirements to allow install in colab. (merge request)
- Fixed indexing of NaN in dynamic search properties. (merge request)
- Changed version requirements on some dependencies. (merge request)
- Update dependencies for parallel test execution with pytest-xdist (merge request)
- Added detailed breadcrumbs (merge request)
- Changed the documentation structure. (merge request)
- allow navigation to entries with processing errors (merge request)
- Changed the versions of pyproject.toml dependencies. (merge request)
- Removed the old material_library ELN example build-in schema. (merge request)
- Changed the used jupyterlab image in NORTH. (merge request)
- Update parsers ref (merge request)
- Moved ELN Base Sections (merge request)
- Make table actions always visible. (merge request)
- Changed entry_type and entry_name for simulations (merge request)
- Removed the generation of gui artifacts for development. (merge request)
- Changed gui artifact generation to happen at app start. (merge request)
- Add service "logtransfer" to submit logs generated at a NOMAD OASIS to the central unit (opt-in). (merge request)
- Duplicate functionality for entries. (merge request)
- Show upload progress when uploading a file in FileEditQuantity (merge request)
- Added a checkbox to avoid accidentally delete mainfile's folders (merge request)
- Added overwrite dialog for existing files (merge request)
- Added example script that printsout metainfo metrics. (merge request)
- Update parser submodule (merge request)
- Added github actions to move PRs to gitlab. (merge request)
- Added entry mode to follow the same workflow as the column/row modes in tabular parser (merge request)
- Added MaterialCardFormula for entries without structure. (merge request)
- Added
rootmode to the tabular parser to enable more generalized usage of mixed column/row modes (merge request) - Link to the plot examples was added to the corresponding documentation (merge request)
- Added docker image build instructions to the docs. (merge request)
- Changed docs and pyproject to require Python 3.9. (merge request)
- Improved the metainfo search visuals and performance. (merge request)
- Changed the icon used for navigating to a particular entry/upload/dataset. (merge request)
- 1. Show upload name column by default in section select dialog (merge request)
- Disabled optimade respone validation. (merge request)
- Improved the custom quantities search menu layout and search functionality. (merge request)
- Fixed Circular referencing (merge request)
- Fixed that created but otherwise failed DOIs are not saved. (merge request)
- Fixed processing with reuse_parser set to False. (merge request)
- Fixed issue with unit system selection not being read correctly from configuration file. (merge request)
- Disable unsupported float point number types on Windows (merge request)
- Rename bad parser test file (merge request)
- Fixed issue in reading deeply nested config file settings. (merge request)
- Adjust phonopy matcher regex (merge request)
- Fixed that metainfo deserialization can overwrite derived values. (merge request)
- Fixed is_admin overwrite in OasisUserManagement. (merge request)
- Fixed issues in upload name not updating correctly after editing. (merge request)
- Fixed data_file referencing of tabular_parser when creating new entries from GUI (merge request)
- Fixed issue with UI allowing terms aggregations for incompatible quantities. (merge request)
- Minor fix workflow normalizer (merge request)
- Add new columns and fix some problems with the datatable (merge request)
- Fixed a bug in handling UI load errors. (merge request)
- Add parsers (merge request)
- Fixed the backend test batch to actually show the coverage. (merge request)
- Check existance of
m_proxy_valuefor references. (merge request) - Minor fix workflow visualizer (merge request)
- ability to reference to the other uploads properly (merge request)
- Added the staging url (merge request)
- Workflow fix (merge request)
- Fixed the availability of the beta/test snack in the UI. (merge request)
- Added additional html sanitization before using html on the UI. (merge request)
- Added Green's functions into electronic properties. (merge request)
- Appending similar quantities (column names) to the appropriate subsection in Tabular_Parser (merge request)
- Added Feature for Creating Workflow in ELN (merge request)
- Added hyperlink to entry in scatter plot widget and hover details (merge request)
- Added an HDF5Reference type to the metainfo. (merge request)
- Added better description of our code documentation practices. (merge request)
- Added properties eln annotation to customize the appearance and the permissions (merge request)
- Adding ReferenceEditQuantity Field to LabfolderProject allowing for further customization (merge request)
- Added the possibility to define plots in the custom schemas that use scalar... (merge request)
- Changed the branding of the app and docs. (merge request)
- Upgraded nomad-lab to Python 3.9 and bumped a few dependency version. (merge request)
- Changed the config to use Pydantic models for UI aspects. (merge request)
- Added a config switch to enable disable north tools. (merge request)
- Refactor NORTH and Jupyterhub deployment. Add a new north API endpoint. Mount... (merge request)
- Added categories to create entry build-in schemas. (merge request)
- Added support for slice notation when choosing axis quantities in the plot annotation. (merge request)
- New workflow visualizer (merge request)
- Added pagination feature for long sections in the archive browser. (merge request)
- Added categories to the example uploads dialog. (merge request)
- Added a new 3D structure viewer based on NGL. (merge request)
- Dialog to create entry (merge request)
- Added ELN Base Sections (merge request)
- Ability to create and modify child classes from referenceEditQuantity (merge request)
- Added possibility for changing the page title to distinguish OASIS installations. (merge request)
- Added automatic push of develop to github. (merge request)
- Added a to_ase function to simulation system Atoms section. (merge request)
- Added a automatically generated changelog to our git. (merge request)
- Added a glossary to the documentation. (merge request)
- Added dropdown list to select from sections. (merge request)
- Implement extended matching of h5 files. (merge request)
- Fixed wrong property inheritance base section order in UI metainfo. (merge request)
- Fixed the build-in schema entry create to use the right definitions. (merge request)
- Fixed direct navigation of reference edit quantity by disabling it. (merge request)
- Fixed bi-directional referencing in ELNs. (merge request)
- Resolve "quickfix: typo in scripts/build_sdist.sh" (merge request)
- Fixed incorrect URL reported in the API call dialogs. (merge request)
- Resolve the reference to a data defined together the schema in the same file (merge request)
- ability to reference all with m_def not only data (merge request)
- only fetch those entries which are processed (merge request)
- normalize path in url (merge request)
- URLEditQuantity is added as a string eln_component to annotations (merge request)
- Fixed issues with the developers setup of nomad. (merge request)
- Fixed endless recursion in metainfo browser. (merge request)
- Fixed the README batches and changed pipeline to push tags to github. (merge request)
- Fixed issue with optimade filter menu performing premature API calls. (merge request)
- Fixed generation of duplicated subsections on updating an entry that triggers tabular parser (merge request)
- Fix the select feature of the Datatable component (merge request)
- Datafile quantity containing
tabular_parserannotation can be referenced (merge request)
- Small UX changes to the upload interface. (merge request)
- Refactored the overview UI code to optimise loading performance. (merge request)