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environment.yml
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environment.yml
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name: gatherer
channels:
- biobuilds
- bioconda
- vnmabus
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- absl-py=0.11.0=py37h89c1867_0
- astor=0.8.1=pyh9f0ad1d_0
- binutils_impl_linux-64=2.35.1=h193b22a_1
- binutils_linux-64=2.35=hc3fd857_29
- biopython=1.77=py37h8f50634_1
- brotlipy=0.7.0=py37h5e8e339_1001
- c-ares=1.17.1=h36c2ea0_0
- ca-certificates=2021.1.19=h06a4308_0
- certifi=2020.12.5=py37h06a4308_0
- cffi=1.14.4=py37hc58025e_1
- chardet=3.0.4=py37he5f6b98_1008
- cryptography=3.3.1=py37h7f0c10b_1
- dbus=1.13.6=hfdff14a_1
- dcor=0.4=pyh39e3cac_0
- decorator=4.4.2=py_0
- diamond=0.9.14=h8b12597_3
- ete3=3.1.2=pyh9f0ad1d_0
- expat=2.2.9=he1b5a44_2
- fontconfig=2.13.1=hba837de_1004
- freetype=2.10.4=h0708190_1
- gast=0.4.0=pyh9f0ad1d_0
- gcc_impl_linux-64=9.3.0=h70c0ae5_18
- gcc_linux-64=9.3.0=h7247604_29
- gettext=0.19.8.1=h14c3975_1
- gffcompare=0.11.2=hc9558a2_1
- glib=2.66.4=hcd2ae1e_1
- google-pasta=0.2.0=pyh8c360ce_0
- grpcio=1.34.1=py37hb27c1af_0
- gst-plugins-base=1.14.5=h0935bb2_2
- gstreamer=1.18.3=h3560a44_0
- gxx_impl_linux-64=9.3.0=hd87eabc_18
- gxx_linux-64=9.3.0=h0d07fa4_29
- h5py=2.10.0=py37h7918eee_0
- hdf5=1.10.4=nompi_h3c11f04_1106
- icu=68.1=h58526e2_0
- idna=2.8=py37_1000
- importlib-metadata=3.4.0=py37h89c1867_0
- infernal=1.1.2=0
- joblib=0.16.0=py_0
- jpeg=9d=h36c2ea0_0
- k8=0.2.5=he513fc3_0
- keras=2.2.5=py37_1
- keras-applications=1.0.8=py_1
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=h77966d4_13
- krb5=1.17.2=h926e7f8_0
- ld_impl_linux-64=2.35.1=hea4e1c9_1
- libblas=3.9.0=7_openblas
- libcblas=3.9.0=7_openblas
- libclang=11.0.1=default_ha53f305_1
- libcurl=7.71.1=hcdd3856_8
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=hcdb4288_3
- libffi=3.3=h58526e2_2
- libgcc-devel_linux-64=9.3.0=h7864c58_18
- libgcc-ng=9.3.0=h2828fa1_18
- libgfortran-ng=7.5.0=h14aa051_18
- libgfortran4=7.5.0=h14aa051_18
- libglib=2.66.4=h164308a_1
- libgomp=9.3.0=h2828fa1_18
- libgpuarray=0.7.6=h14c3975_1003
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=7_openblas
- libllvm10=10.0.1=he513fc3_3
- libllvm11=11.0.1=hf817b99_0
- libnghttp2=1.41.0=h8cfc5f6_2
- libopenblas=0.3.12=pthreads_hb3c22a3_1
- libpng=1.6.37=h21135ba_2
- libpq=12.3=h255efa7_3
- libprotobuf=3.14.0=h780b84a_0
- libssh2=1.9.0=hab1572f_5
- libstdcxx-devel_linux-64=9.3.0=hb016644_18
- libstdcxx-ng=9.3.0=h6de172a_18
- libuuid=2.33.1=h14c3975_0
- libxcb=1.13=h7f98852_1003
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.10=h72842e0_3
- libxslt=1.1.33=h15afd5d_2
- llvmlite=0.35.0=py37h9d7f4d0_1
- lxml=4.6.2=py37h77fd288_1
- lz4-c=1.9.3=h9c3ff4c_0
- mako=1.1.4=pyh44b312d_0
- markdown=3.3.3=pyh9f0ad1d_0
- markupsafe=1.1.1=py37h5e8e339_3
- minepy=1.2.3=py37h14c3975_0
- minimap2=2.17=hed695b0_3
- mysql-common=8.0.22=ha770c72_3
- mysql-libs=8.0.22=h935591d_3
- ncurses=6.2=h58526e2_4
- networkx=2.4=py_1
- nspr=4.29=h9c3ff4c_1
- nss=3.60=hb5efdd6_0
- numba=0.52.0=py37hdc94413_0
- numpy=1.18.5=py37h8960a57_0
- obonet=0.2.3=py_0
- openssl=1.1.1i=h27cfd23_0
- pandas=1.0.3=py37h0da4684_1
- patsy=0.5.1=py_0
- pcre=8.44=he1b5a44_0
- perl=5.26.2=h36c2ea0_1008
- pip=20.1.1=py_1
- protobuf=3.14.0=py37hcd2ae1e_1
- psutil=5.7.0=py37h7b6447c_0
- pthread-stubs=0.4=h36c2ea0_1001
- pycparser=2.20=pyh9f0ad1d_2
- pygpu=0.7.6=py37h902c9e0_1002
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyqt=5.12.3=py37h89c1867_7
- pyqt-impl=5.12.3=py37he336c9b_7
- pyqt5-sip=4.19.18=py37hcd2ae1e_7
- pyqtchart=5.12=py37he336c9b_7
- pyqtwebengine=5.12.1=py37he336c9b_7
- pysocks=1.7.1=py37h89c1867_3
- python=3.7.7=hcff3b4d_5
- python-dateutil=2.8.1=py_0
- python_abi=3.7=1_cp37m
- pytz=2020.5=pyhd8ed1ab_0
- pyyaml=5.4.1=py37h5e8e339_0
- qt=5.12.9=h9d6b050_2
- readline=8.0=he28a2e2_2
- requests=2.22.0=py37_1
- rnasamba=0.2.0=py37hc1659b7_1
- scikit-learn=0.23.1=py37h8a51577_0
- scipy=1.5.0=py37ha3d9a3c_0
- setuptools=49.6.0=py37h89c1867_3
- six=1.15.0=pyh9f0ad1d_0
- sqlite=3.34.0=h74cdb3f_0
- statsmodels=0.11.0=py37h516909a_0
- sysroot_linux-64=2.12=h77966d4_13
- tensorboard=1.14.0=py37_0
- tensorflow=1.14.0=h4531e10_0
- tensorflow-base=1.14.0=py37h4531e10_0
- tensorflow-estimator=1.14.0=py37h5ca1d4c_0
- termcolor=1.1.0=py_2
- theano=1.0.4=py37hf484d3e_1000
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=h21135ba_1
- tqdm=4.56.0=pyhd8ed1ab_0
- trnascan-se=2.0.5=pl526h516909a_0
- typing_extensions=3.7.4.3=py_0
- urllib3=1.25.11=py_0
- werkzeug=1.0.1=pyh9f0ad1d_0
- wheel=0.36.2=pyhd3deb0d_0
- wrapt=1.12.1=py37h5e8e339_3
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.12=h516909a_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- zipp=3.4.0=py_0
- zlib=1.2.11=h3c3a69f_1
- zstd=1.4.8=ha95c52a_1
- pip:
- fastsemsim==1.0.0
prefix: /home/pitagoras/miniconda3/envs/gatherer