surpyvor.md

This software can merge and intersect with the logic of SUrVIVOR, considering the breakpoints.

mamba create -n surpyvor python==3.7

mamba install -c bioconda surpyvor

# Intersect SV vcf

surpyvor highconf --variants 15X_long.vcf 15X_NGS.vcf -d 10 -o isec.vcf

# Union

surpyvor highsens --variants 15X_long.vcf 15X_NGS.vcf -d 10 -o union.vcf

# Venn

surpyvor venn --variants 15X_long.vcf 15X_NGS.vcf -d 10  --plotout PLOTOUT --keepmerged -i