You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
{{ message }}
This repository has been archived by the owner on Jan 22, 2023. It is now read-only.
When running with Python 3.8, I get the following error message:
Featurizing molecules.
Traceback (most recent call last):
File "/Users/dkazempour/opt/anaconda3/bin/mol2vec", line 8, in
sys.exit(run())
File "/Users/dkazempour/opt/anaconda3/lib/python3.8/site-packages/mol2vec/app/mol2vec.py", line 165, in run
args.func(args)
File "/Users/dkazempour/opt/anaconda3/lib/python3.8/site-packages/mol2vec/app/mol2vec.py", line 25, in do_featurize
features.featurize(args.in_file, args.out_file, args.model, args.radius, args.uncommon)
File "/Users/dkazempour/opt/anaconda3/lib/python3.8/site-packages/mol2vec/features.py", line 465, in featurize
word2vec_model[uncommon]
TypeError: 'Word2Vec' object is not subscriptable
Which library is causing this issue?
Update: I recognized that my observation is related to the other issue titled "update sentences2vec function for gensim 4.0" by Maledive.
The causing library is gensim. Something has changed at the 4.x.x versions, which yields the above stated error.
A temporary 'fix' (actually a quite quick-n-dirty hack) is as follows: pip install -Iv gensim==3.8.2
Afterwards I could successfully run mol2vec again.
The text was updated successfully, but these errors were encountered:
When running with Python 3.8, I get the following error message:
Featurizing molecules.
Traceback (most recent call last):
File "/Users/dkazempour/opt/anaconda3/bin/mol2vec", line 8, in
sys.exit(run())
File "/Users/dkazempour/opt/anaconda3/lib/python3.8/site-packages/mol2vec/app/mol2vec.py", line 165, in run
args.func(args)
File "/Users/dkazempour/opt/anaconda3/lib/python3.8/site-packages/mol2vec/app/mol2vec.py", line 25, in do_featurize
features.featurize(args.in_file, args.out_file, args.model, args.radius, args.uncommon)
File "/Users/dkazempour/opt/anaconda3/lib/python3.8/site-packages/mol2vec/features.py", line 465, in featurize
word2vec_model[uncommon]
TypeError: 'Word2Vec' object is not subscriptable
Which library is causing this issue?
Update: I recognized that my observation is related to the other issue titled "update sentences2vec function for gensim 4.0" by Maledive.
The causing library is gensim. Something has changed at the 4.x.x versions, which yields the above stated error.
A temporary 'fix' (actually a quite quick-n-dirty hack) is as follows: pip install -Iv gensim==3.8.2
Afterwards I could successfully run mol2vec again.
The text was updated successfully, but these errors were encountered: