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WEBKNOSSOS Logo

WEBKNOSSOS is an open-source tool for annotating and exploring large 3D image datasets.
  • Fly through your data for fast skeletonization and proof-reading
  • Create 3D training data for automated segmentations efficiently
  • Scale data reconstruction projects with crowdsourcing workflows
  • Share datasets and annotations with collaborating scientists

Start using WEBKNOSSOS - On your own server - User Documentation - Contact us

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Website and hosted version

https://webknossos.org

Features

Publication

Boergens, Berning, Bocklisch, Bräunlein, Drawitsch, Frohnhofen, Herold, Otto, Rzepka, Werkmeister, Werner, Wiese, Wissler and Helmstaedter webKnossos: efficient online 3D data annotation for connectomics. Nature Methods (2017) DOI:10.1038/NMETH.4331.

Read more about the original publication.

Installation

WEBKNOSSOS is open-source, so you can install it on your own server.

Check out the documentation for a tutorial on how to install WEBKNOSSOS on your own server.

For development installations, please see DEV_INSTALL.md file.

Contributions, Contact and Support

We welcome community feedback and contributions! We are happy to have

For details on community contributions, please refer to our Contributing guide.

Contact us at [email protected].

scalable minds offers commercial hosting, support and development services for WEBKNOSSOS.

Credits

WEBKNOSSOS was inspired by KNOSSOS.

Thanks

  • Browser Stack for letting us test WEBKNOSSOS on a variety of different devices Browserstack Logo
  • CircleCI for letting us run builds and tests on their CI

License

AGPLv3