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Possible to add support for Shimadzu XML format? #34

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mr-september opened this issue Jun 13, 2024 · 2 comments
Open

Possible to add support for Shimadzu XML format? #34

mr-september opened this issue Jun 13, 2024 · 2 comments

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@mr-september
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Have this old Shimadzu MALDI that doesn't really allow bulk spectra exporting in the usual formats like mzml, but only in just .xml.

I tried using the default import function to try and parse this, but it said something about unknown file format.

I have attached an example XML file (zipped as per github's requirements).

Test Expor A2-D3.zip

Would this be something feasible to add support for?

@sgibb
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sgibb commented Jun 13, 2024

Is it supported by msconvert?
e.g., Shimadzu LCD (except ITOF) distributed with ProteoWizard

I am not working in the MS field anymore. While I still maintaining MALDIquantForeign and fixing bugs I won't add new features. But I would happy to help with the existing code base if you want to add it yourself.

@mr-september
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Unfortunately msconvert doesn't seem to recognize it. It is a 7090 model, and while Shimadzu typically uses .lcd, I could not find them from this machine.

I have never worked with XML parsing before, but would be keen to have a go. If you just have a glance at the .xml file above, does it look somewhat similar-ish to perhaps mzXML? Would adapting from the existing mzXML parser be a good way to start?

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