CHANGES.rst

0.16.3 (2024-08-29)

mosaic_pipeline

• Only load patch table when needed. [#1367]

source_catalog

• Populate segmentation image metadata. [#1391]

resample

• Use association product name for output meta.filename by default [#1391]

0.16.2 (2024-08-23)

pipeline

• Added suffix to the spec of ExposurePipeline with a default value of cal. Removed explicit setting of suffix so that it can be passed as an argument to strun. [#1378]

0.16.1 (2024-08-13)

• update stpipe to use ModelLibrary [#1364]
• update stcal to use outlier detection [#1364]

0.16.0 (2024-08-13)

Documentation

• Update RTD to include mosaic data (i2d) description [#1262]

general

• Add regression test for DMS400 and additional tests for SkyMatchStep. [#1358]
• Add regression test for DMS373, mosaic pipeline [#1348]
• Update the exposure pipeline to accept a roman datamodel as input [#1296]
• Update okify script to use GA directory structure [#1282]
• pin numpy to <2 [#1275]
• refactor exposure level pipeline to use asn's and ModelContainer [#1271]
• Add catalog source step to the mosaic pipeline [#1266]
• Rename highlevelpipeline to mosaic pipeline [#1249]
• Replace SourceDetectionStep with SourceCatalogStep in ELP. [#1276]
• replace usages of copy_arrays with memmap [#1316]
• Replace ModelContainer with ModelLibrary [#1241]
• Updated sky background usage in code and tests to use maker utilities. [#1351]
• Refactor general step input handling to avoid early closing of input files to allow using more lazy loading [#1342]

source_catalog

• Add PSF photometry capability. [#1243]

dq_init

• Refactor DQInitStep to use the RampModel method of creating ramps. [#1258]

outlier_detection

• Set single=True to use many_to_many when creating median image. [#1260]

stpipe

• Add ModelContainer support to Step._datamodels_open to allow loading pars-* files from CRDS. [#1270]

tweakreg

• Integration with SourceCatalogStep: allow usage of results from SourceCatalogStep. [#1276]

resample

• Fix incorrect number of starting planes for context image. [#1355]

mosaic_pipeline

• Fix construction of skycell WCS. [#1297]

tweakreg

• Remove unnecessary global variable ALIGN_TO_ABS_REFCAT. [#1314]
• Update default absolute separation for tweakreg. [#1352]

skymatch

• Populate valid metadata even when then are no overlapping images to match [#1360]

0.15.1 (2024-05-15)

• updated rad and roman_datamodels to 0.20.0

0.15.0 (2024-05-08)

skymatch

• Update step to always return a ModelContainer. [#1208]
• Fix bug that prevented meta.background.subtracted from being set with the proper datatype. [#1233]

patch_match

• Code to determine which patches overlap a given image. [#1161]
• Plotting utility to show image spatial relationship to matched patches and candidate patches. [#1204]

tweakreg

• Allow single open Roman datamodels to be used as input to be consistent with expected behavior in ELP. [#1089]
• Update tweakreg regression tests to test astrometric performance. Use "clip_accum" for better robustness. [#1185]

general

• Initial resample to a skycell in the hlp [#1214]
• Add preview files to HLP tests [#1199]
• Allow ModelContainer to work properly with context manager. [#1147]
• Update the dqflags to use the ones stored in roman_datamodels [#1099]
• Add script for creating regtest files; consolidate files used for some tests. [#1084]
• Update the high level pipeline to use updates in Outlier_detection and tweakreg [#1143]

documentation

• Fixed datamodels documentation to use correct API. [#1112]
• Improve PSF fitting configuration, background subtraction, grid point selection. [#1125]

dq_init

• Copy reference pixels during dq_init to avoid larger files in later processing steps [#1121]
• Allow dq_init to pass through keys not defined in RampModel schema [#1151]

flux

• Set flux step status for each input. [#1160]

stpipe

• Update meta.calibration_software_version for results of Step runs to record the version of romancal used to produce the result. [#1194]
• Update stpipe.core.finalize_results to record the CRDS information only if a step uses reference files. [#1201]
• Populate logs for L3 files in addition to L2 files [#1207]

resample

• Update location of basic attributes. [#1131]
• Allow user to provide DQ flags to use/exclude when creating resampling mask. [#1166]
• Updated Level 3 cal_step attribute creation. [#1165]
• Fix bug that prevented properly update of the resampled output weight and context arrays. [#1181]
• Update Level 3 output basic attribute. [#1188]
• Populate the Level 3 wcsinfo [#1182]
• Make rotation matrix 2d for schema validation [#1205]
• Include logs of individual L2 products [#1207]
• Resample members should use actual file names from association file [#1209]
• Populate the l3 product individual_image_meta block [#1216]

outlier_detection

• Allow ModelContainer as input. [#1092]
• Update location of basic attributes. [#1131]
• Set single=False in the call to resample to properly create a median image. [#1146]

ramp_fitting

• Changed image units from e/s to DN/s (and added support for MJy/sr). Added gain reduction to convert to these units. [#1128]

flux

• Create FluxStep to apply the flux correction to Level 2 data. [#1120]

source_detection

• Make PSF fitting the default. [#1185]

source_catalog

• Added Source Catalog Step. [#1102]

0.14.0 (2024-02-12)

general

• Updated the compare_asdf diff reports to include descriptive information about what is being compared. [#1044]

dq_init

• Add the ability to copy resultantdq from a SDF science raw model to the new rampmodel created by dq_init [#1085]

outlier_detection

• Add outlier detection step documentation. [#1042]
• Add outlier detection unit tests. [#1058]
• Add additional documentation of the scale and snr parameters. [#1058]
• Updated information for the scale and snr parameters in the outlier_detection step docs. [#1062]

jump detection

• Added uneven ramp-jump detection docs. [#1035]

documentation

• Remove sphinx-asdf requirement, fix issue where menu does not scroll. [#1063]
• Update jump step docs [#1035]
• added user documentation for roman_static_preview script [#1046]

ramp_fitting

• Add default WCS when constructing image model from ramp model [#1072]
• Account for Poisson noise from dark current when fitting ramps. [#1088]

resample

• Update resample step to handle the L3 meta data [#1057]

general

• Update elp steps to check for CRDS not returning a reference file [#1055]
• Fix bug where compare_asdf failed to detect DataModel type differences. [#1066]

0.13.0 (2023-11-28)

outlier_detection

• Implemented outlier-detection step. [#981]

associations

• Add FOV associations to the code [#931]

dark

• Removed err array from dark current tests. [#938]

general

• Update elp pipeline code to capture a list from tweakreg [#985]
• Add code to run the steps needed for the high level processing (roman_hlp) [#980]
• Update pipeline code to correct cal_step and suffixes [#971]
• Update pipeline code to run through tweakreg with single files and associations [#960]
• Update regression tests with new data and update ramp fitting tests to use ols_cas22 [#911]
• Fix bug with ModelContainer.get_crds_parameters being a property not a method [#846]
• Fix random seed bug in PSF fitting methods [#862]
• Fix regression tests for PSF fitting methods [#872]
• Fix regression test compare_asdf function replacing use of asdf.commands.diff with deepdiff and add deepdiff as a test dependency [#868]
• Add astropy.table.Table support to compare_asdf [#915]
• Use tolerance for more comparisons in compare_asdf [#917]
• Use array comparison options (including nan equality) when comparing WCS objects during compare_asdf [#941]
• Fix dynamic importing issue with the ddtrace package. [#1024]

ramp_fitting

• Inititial implementation of the Uneven Ramp fitting [#779]
• Fix opening mode for references to be read-only [#854]
• Make uneven ramp fitting the default [#877]
• Update Ramp fitting code to support the stcal changes to the ramp fitting interface which were necessary to support jump detection on uneven ramps [#933]
• Add uneven ramp fitting documentation [#944]
• Enable jump detection within the Cas22 ramp fitting be default, and add regression tests for it. [#991]
• Implement next round of SOC verification tests for uneven ramps [#970]

refpix

• Update cal_step, add suffix and add to the exposure pipeline [#890]
• Enable apodized FFT interpolation by default. [#1017]

resample

• Implement resampling step. [#787]
• Use resampled exposure time images to compute image exposure times. [#959]

scripts

• added roman_static_preview script to generate static previews of ASDF images [#953]
• fixed asn_from_list script [#972]

source_detection

• Support for PSF fitting (optional) for accurate centroids. [#841, #984]
• Save source catalog to a structured array. [#987]

stpipe

• Remove checks on CI in production code [#955]

tweakreg

• Fix a bug due to which source catalog may contain sources outside of the bounding box. [#947]

0.12.0 (2023-08-18)

source_detection

• Skip the step if the data is not imaging mode. [#798]

tweakreg

• Skip the step if the data is not imaging mode [#798]
• Add regression test for TweakReg. [#707]
• WCS fit results are now available in meta.wcs_fit_results. [#714]

documentation

• Update info strings in the pipeline to provide uniform syntax [#721]
• Updated wording about ELP and HLP in the Associations documentation for RTD
• Updated the primary branch referenced in CONTRIBUTING to be main
• Updated reference pixel correction documentation to include discretization bias discussion. [#716]

skymatch

• Added SkyMatchStep to pipeline [#687]
• Registered SkyMatchStep in stpipe. [#770]

jump

• Accept and ignore additional return values from stcal detect_jumps [#723]

ramp_fitting

• Update unit tests for stcal 1.4.0 [#725]
• Adjust ramp slopes and associated unceratinties for gain. [#804]

refpix

• Add initial reference pixel correction step implementation. [#704]

saturation

• Add read_pattern argument to flag_saturated_pixels. [#836]

general

• Add metrics_logger to the regression tests [#831]
• Update pipeline logic for saturation checks [#824]
• Update the pipeline code to process all the uncal files in an association [#802]
• ModelContainer supports slice and dice. [#710]
• Add ModelContainer to romancal.datamodels. [#710]
• Move is_assocation from roman_datamodels to romancal. [#719]
• Update romancal to use altered API for maker_utils. [#717]
• Require stcal >= 1.4 [#723]
• Fix search for docs. [#768]
• Remove aws install option. [#767]
• Bump minimum asdf version to 2.15.0. [#777]
• Remove unused extras (ephem, lint) from build configuration and regression testing [#784]
• Make all random number generation for tests both seeded and use the same random number generation system. [#771]
• Make steps operate in place rather than copying. [#774]
• Fix devdeps Jenkins job. [#795]
• Remove use of the deprecated pkg_resources module from setuptools. [#829]
• Add dev install option. [#835]
• Add PSF photometry methods [#794]

0.11.0 (2023-05-31)

tweakreg

• Added tmpdir to the unit tests for test files [#702]
• Added logic to handle cases where an absolute catalog cannot be created. [#698]

associations

• Initial association code for GBTDS observations [#661]

Documentation

• Update dq flags to include "GW_AFFECTED_DATA" flag [#699]

general

• Updated datamodel maker utility imports. [#654]
• Update non-VOunits to using astropy.units. [#658]
• update minimum version of asdf to 2.14.2 and jsonschema to 4.0.1 and added minimum dependency checks to CI [#664]
• Remove use of pytest-openfiles [#666]
• Remove the codecov dependency [#677]
• Remove explicit dependence on stdatamodels. [#676]
• Drop support for Python 3.8 [#694]

source_detection

• Bug fix to ensure that the returned result is a copy of the input datamodel. [#700]
• Added SourceDetection Step to pipeline [#608]
• Added option of fixed random seed for unit tests to avoid intermittent failures from randomness. [#668]
• Fix source detection object instantiation. [#669]
• Small bug fix to ensure that output catalogs are not attached to the file when save_catalogs=False [#684]

outlier_detection

• Added an empty outlier detection step to the pipeline, as well as a simple test and documentation. [#689]

astrometric_utils

• Added option to provide epoch so that the coordinates are corrected by proper motion. [#686]

0.10.0 (2023-02-21)

general

• Adds explicit test for PSF keywords are present in the cal files. [#648]
• Add pre-commit configuration to repository. [#622]
• Use isort and black to format code, also upgrade all string formats using flynt. [#645]
• Update the suffix for the stored filename to match the filename [#609]
• DQ step flags science data affected by guide window read [#599]
• Fix deprecation warnings introduced by pytest 7.2 ahead of 8.0 [#597]
• Implemented support for quantities in reference files. Updated unit tests for these changes. [#624]

associations

• Initial association code with asn_from_list and some basic rules [#642]

jump

• Update jump units to roman_datamodels from astropy units [#646]
• Update default input CR thresholds to give reasonable results [#625]
• Added support for Quantities for data arrays. [#616]

tweakreg

• First implementation of TweakRegStep into the pipeline [#643]

0.9.0 (2022-11-14)

general

• New Roman's RTD page layout [#596]
• pin numpy to >=1.20 [#592]
• replace flake8 with ruff [#570]

jump

• Changes for new keywords (currently unused by Roman) to control snowball and shower flagging in jump detection. [#593]

photom

• Updates so that the default suffix is used for spectroscopic data. [#594]
• Change photom step to forcibly set the photometric keywords to None for spectroscopic data. [#591]

tests

• refactor tox environment factors and structure GitHub Actions into dependent workflow [#551]

0.8.1 (2022-08-23)

• pin asdf above 2.12.1 to fix issue with jsonschema release [#562]
• pin roman_datamodels to newest feature version [#563]

0.8.0 (2022-08-12)

assign_wcs

• Add distortion transform to assign_wcs step. [#510]

Documentation

• include information about the distortion reference file used in the assign_wcs step [#542]

flat

• Removed try/except condition on Flat Reference file CRDS lookup. [#528]

general

• Update pipeline steps to define the default suffix when saving the step results [#521]
• Simplified reference file name and model storage in dq and flat steps. [#514]
• Update CI workflows to cache test environments and depend upon style and security checks [#511]
• Release numpy version requirement [#544]
• Moved build configuration from setup.cfg to pyproject.toml to support PEP621 [#512]
• Added support for STCAL handing of fully saturated data in both the pipeline and rampfit step. Added a unit test for the rampfit changes and a regression test for the pipeline chages. [#541]
• Update stpipe requirement to >=0.4.2 [#545]
• Fix input_filename when DataModel is input to ExposurePipeline [#553]
• Populate 'ref_file' section in meta after step is run. [#492]
• pin asdf above 2.12.1 to fix issues with unit and regression tests [#562]

photom

• Adds explicit test that photometric keywords are preserved for spectroscopic data. [#513]
• Changed optical element W146 to F146. [#552]

ramp_fitting

• Added multiprocessing ramp test. Fixed ols ramp fit. Updated ramp_fit to add photometry to image file generation. [#523]

tests

• Updated tests to account for the change in dimensionality of the err variable in ramp datamodel. [#520]
• Added SOC tests to check for information available in Level 2 images to correct for pixel geometric distortion. [#549]

0.7.1 (2022-05-19)

general

• Update regression tests with new data, remove skips for flat fielding tests, and code cleanup [#504]

jump

• Enable multiprocessing in jump detection step. [#503]

linearity

• Account for possible zero frame in linearity [#506]

saturation

• Updated the saturation step due to an update in STCAL. [#500]

0.7.0 (2022-05-13)

Documentation

• Add documentation for error propagation in ramp fitting and flat field [#476]
• Add documentation for DNS build 0.5, e.g. reference array trimming [#457]
• Updated documentation for the photom step and removed the area reference documentation. [#488]
• Added documentation for Distortion reference files. [#493]
• Updated wording about ELP and HLP in the Associations documentation for RTD
• Updated the primary branch referenced in CONTRIBUTING to be main

linearity

• Linearity correction now supports NaN's in the reference file. [#484]

photom

• Photom updated to skip updating photometric converstions for spectral data [#498]
• Added photom correction step and unit tests. [#469]
• Added SOC test for absolute photometric calibration. Tweak logging in photom step. [#479]

0.6.0 (2022-03-02)

general

• Update the regression test for new datamodels and suffixes. [#442]
• Updated PEP 8 checks to be more comprehensive. [#417]
• Added regression tests for linearity correction. [#394]
• Added regression tests for dark_current subtraction. [#392]
• Updated tests to utilize new maker function code. [#395]
• Border reference pixel arrays (and their dq) are copied in dq_init. They are trimmed from the science data (and err/dq) in ramp_fit. [#435]

Documentation

• Add documentation on using info and search with Roman datamodels [#432]
• Add the suffixes used in the pipeline if steps.<step>.save_results is set [#415]
• Update references_general.rst to remove TBD and add DQ flag information. [#396]
• Initial romancal documentation for using datamodels. [#391]
• Added documentation for PHOTOM and Area reference files, which required placeholder documentation for the photom step. In addition, I fixed an improper object in dark documentation. [#452]

dark

• Updated dark current step to use stcal. Created tests for the updated step. [#420]
• Fixed dark subtraction output crash. [#423]

jump

• Update Jump regression test parameters to reduce test time [#411]
• Update code to suppress output from the jump step if not requested [#399]

Pipeline

• Migrate JWST suffix infrastructure to the Roman Exposure Pipeline [#425]

0.5.0 (2021-12-13)

general

• Added regression tests for SOC-604. [#381]
• Added regression tests for SOC-622. [#385]

linearity

• Implemented linearity correction using stcal. [#360]

assign_wcs

• Added assign_wcs step to romancal. [#361]

flat

• Added check in flat field step to skip spectroscopic observations. Added test. [#366]

jump

• Updated filenames in regression test script [#351]
• Updates to add the suffix _flat to the step output [#349]
• Updates for unit tests to use stcal [#322]
• Fix to jump_step to save the update pixel and group dq arrays. [#319]
• Updated code for jump step using stcal. [#309]
• Added simple regression test. [#315]
• Updated temp readnoise file in jump tests to include required exposure keywords. [#333]

ramp_fitting

• Update ramp_fitting regression test output file names [#369]
• Implemented ramp_fitting using stcal. [#276]

saturation

• Implement saturation correction using stcal, roman_datamodels and romancal.stpipe [#348]
• Updated RTD to include saturation reference files. [#350]

stpipe

• Record step/pipeline logs in ImageModel.cal_logs array. [#352]

0.4.2 (2021-09-13)

general

• Corrected artifactory path from romancal-pipeline to roman-pipeline. [#295]

0.4.1 (2021-09-02)

general

• Updated requirements-sdp.txt for release.

0.4.0 (2021-09-01)

general

• Added regressions tests for dq_init utilizing mask file in CRDS. [#290]
• Updates for requirements & pip changes [#286]
• Added test for crds flat file temporal matching (SOC-636.1). [#283]
• Updates for readthedocs [#260]
• Added DQ support. [#262]
• Added stcal as dependency on romancal [#255]
• Locked romancal library dependency version RDM (0.1.2). [#246]
• Update roman_datamodels, stcal, and stpipe to resolve issues with recent pip releases. [#284]

Documentation

• Updated README weblinks.[#241]
• Added documentation for dark current reference files. [#232]
• Added documentation for gain step. [#231]

0.3.1 (2021-06-02)

general

• Added grism to the CRDS tests [# 225]

0.3.0 (2021-05-28)

datamodels

• Added sorting to test parameters to preserve order for tests done by parallel pytest workers. [#136]
• Update setup.cfg to match JWST warnings & error list and initial pass for code fixes. (#188)

general

• Added grism to the regression tests [# 222]
• Update README and CHANGES.rst [#195]
• Added sorting to test parameters to preserve order for tests done by parallel pytest workers. [#136]
• Update setup for more strict PEP8 checking [#176]
• Added documentation for rmask files. [#181]

datamodels

• Make necessary changes to use roman_datamodels that is based on the tag approach [#212]
• Add cal_step added to datamodels [#177]
• Updated model subclass code - changed from returning a generator to a set for use with more complicated model selections. [#169]
• Corrected time format in tests to astropy time objects. [#169]
• Cleaned up old tests to better reflect present models. [#169]
• Added check for core metadata inclusion in non-reference files. [#169]
• Add Photom Schema [#200]

0.2.0 (2021-02-26)

stpipe

• Create stpipe module which provides Roman-specific Step and Pipeline subclasses. [#103, #128]

flatfield

• Clean up and improve flatfield step. [#122]

datamodels

• Add unit tests for the dark current subtraction step [#168]
• Add dark current subtraction step for use with WFI data [#146]
• Add datamodel and schema for mask files [#143]
• Update output_ext in the base Step class to .asdf from .fits [#127]
• Added RampModel, GLS_RampFitModel, RampFitOutputModel and schemas. [#110]
• Update core schema with latest filter information [#97]
• Add the variable arrays to the schema & datamodel for Image files [#93]
• Add Roman Readnoise model [#90]
• Add Gain Model Schema [#82]
• Added DQModel and schemas. [#81]

0.1.0 (2020-12-11)

datamodels

• First release of romancal. Includes the core metadata and a FlatModel.
• Update date strings in schemas and tests from strings to astropy objects [#32]
• Add Ramp Model Schema [#56]
• Update Flat Schema for DQ Array DType [#55]
• Add exptype information for roman data [#41]
• Use Astropy Time Objects in date and Useafter [#32]
• Add level 1 schema file for Wide Field Imaging model [#31]
• Create a Data Models sub-package for Roman [#17]
• Use the ASDF pytest plugin to validate the datamodels schemas [#6]