1.2.3

Features:

Snakemake wrappers up to 3.13.7
fair_genome_indexer up to 3.8.1
Allow local modules and wrappers

1.2.2

Features:

Snakemake wrappers up to 3.13.6
fair_genome_indexer up to 3.8.0
fair_fastqc_multiqc up to 2.3.5

1.2.1

Features:

Snakemake wrappers up to 3.10.1
fair_genome_indexer up to 3.4.4
fair_fastqc_multiqc up to 2.2.7
log, benchmark, and temp files renamed to follow rule names

1.2.0

Features:

rRNA ratio and Mitocholdrial ratio added to QC

1.1.1

Features:

Resources reservation have been set accordingly to user requests
Documentation update

1.1.0

Features:

all configuration keys are now optional
fair_fastqc_multiqc_pipeline update to 2.2.3
fair_genome_indexer update to 3.4.0
snakemake-wrappers update to 3.7.0
MultiQC configuration file

Fixes:

Documentation errors

1.0.2

Features:

Use lookup and branch instead of hand made functions
Pipeline can be used through mamba + apptainer
fair_fastqc_multiqc_pipeline version 2.0.4
fair_genome_indexer version 3.1.4
snakemake wrappers v3.3.6

1.0.1

Features

Salmon quant merge now annotates transcripts as well as genes
DataVzrd to explore quantification if needed

Fix

Missing fastp report page

1.0.0

Features

Control/Clean fastq files
Estimate quantification
Build report (snakemake + datavzrd)
Build a single table with all counts from all samples
Snakemake-wrappers v3.3.3
Snakemake v8+ compatible
fair_genome_indexer v3.0.0