Topic+QA pipeLine
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Updated
May 4, 2020 - Jupyter Notebook
Topic+QA pipeLine
Multi Label Text Classification of ICD-10-CM codes on the clinical record corpus for eHealth Lab CLEF - 2020
This repository contains data and BioBert based NER model monologg/biobert_v1.1_pubmed from community-uploaded Hugging Face models for detecting entities such as chemical and disease.
👑🦠 Annotating PMC and PubMed articles for Covid-related entities
Relation Extraction using BERT and BioBERT - using BERT, we achieved new state of the art results
This project is a demo for Bert Question Answering on medical data.
COVID-19 Open Research Dataset Challenge (CORD-19)
summer internship project @ JetBrains Research
Bi Master - Grupo de desafios de NLP: Classificação Multiclasse, BIOBERT, spaCy, NER, POS, Tópicos, Geração de Texto, sentence-bert, Tensorflow USEm.
NER and Relation Extraction from Electronic Health Records (EHR).
Browse Covid-19 & SARS-CoV-2 Scientific Papers with Transformers 🦠 📖
Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)
Ping Lab Intern Project, Summar, 2022: Building Named Entity Recognition model with fine tuning BioBERT - a data engineering approach
NLP Named Entity Recognition dalam bidang Biomedis, mendeteksi teks dan membuat klasifikasi apakah teks tersebut mempunyai entitas plant atau disease, memberi label pada teks, menguji hubungan entitas plant dan disease, menilai kecocokan antara kedua entitas, membandingkan hasil uji dengan menggunakan models BERT
Training and computational/visualization analysis of BERT and BioBERT using PyTorch and huggingface.
The model identifies chemical components and genes named entities and extracts the relations of the chemical-gene pair jointly. It utilizes the BioBERT model in the named entity recognition and the graphs neural networks for the RE subtasks.
A simple binary prediction model that gets the Alzheimer's drugs' description texts as input. It classifies the drugs into two Small Molecules (SM) and Disease modifying therapies (DMT) categories. The model utilizes BERT for word embeddings.
Ready to use BioBert pytorch weights for HuggingFace pytorch BertModel 😌
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