Utilities for building standardized command-line interfaces for biosimulation software packages
-
Updated
Sep 6, 2024 - Python
Utilities for building standardized command-line interfaces for biosimulation software packages
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.
Tutorials for BioSimulators
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
LibSBMLSim mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Add a description, image, and links to the biosimulators topic page so that developers can more easily learn about it.
To associate your repository with the biosimulators topic, visit your repo's landing page and select "manage topics."