GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.
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Updated
Jul 16, 2024 - R
GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.
a web-based 2D high-resolution brain image viewer
A simple Python-based tool for finding brain atlas regions based on MNI coordinates.
LocareJSON is a collection of JSON schemas for defining geometrical shapes with coordinates in 3D brain atlas coordinate spaces.
Brain tissue segmentation using several algorithms: EM, Atlas-based methods, nnunet
a web-based 3D tool to register brain MRI volumes to the Marmoset Brain Atlas
Search, download, and prepare brain atlas data.
Brain/MINDS Marmoset Brain Atlas Viewer made using Unity engine
BBP domains specification (schemas, vocabularies)
Automatic annotation of cell identities in dense cellular images.
A neuroanatomy-based augmented reality experience powered by OpenCV. Features 3D visuals of the Atlas Brain Map slices with real-time ArUco marker detection.
Dictionary of Functional Modes for brain imaging
Pairwise Brain Atlas Construction (BAtCh) HTCondor/SLURM workflow
Code repository for automatic retrieval and registration of rodent brain atlases
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